Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 1.4e-33 145.6 66 100.0
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 3.6e-26 120.9 66 86.4
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 2.2e-15 85.1 60 61.7
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 3.5e-13 77.8 55 65.5
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.1e-11 72.8 56 55.4
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 2.5e-11 71.6 54 61.1
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 4.3e-11 70.9 51 62.7
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 5.6e-11 70.5 63 55.6
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 5.6e-11 70.5 63 55.6
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 7.3e-11 70.1 57 49.1
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 9.5e-11 69.7 66 51.5
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 9.5e-11 69.7 52 55.8
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 1.2e-10 69.3 54 57.4
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 1.6e-10 68.9 56 62.5
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 4.7e-10 67.4 57 50.9
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 6.1e-10 67.0 52 57.7
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 8.0e-10 66.6 58 51.7
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 8.0e-10 66.6 52 51.9
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.0e-09 66.2 49 61.2
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 1.4e-09 65.9 44 63.6
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.8e-09 65.5 50 50.0
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 1.8e-09 65.5 56 53.6
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.8e-09 65.5 56 53.6
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.8e-09 65.5 56 53.6
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 2.3e-09 65.1 47 57.4
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 3.1e-09 64.7 40 65.0
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 4.0e-09 64.3 40 62.5
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 4.0e-09 64.3 56 53.6
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 4.0e-09 64.3 56 53.6
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 5.2e-09 63.9 53 49.1
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 5.2e-09 63.9 56 53.6
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 5.2e-09 63.9 48 62.5
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 5.2e-09 63.9 66 48.5
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 6.8e-09 63.5 56 53.6
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 6.8e-09 63.5 45 55.6
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 8.9e-09 63.2 49 59.2
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 8.9e-09 63.2 48 62.5
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 8.9e-09 63.2 47 57.4
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 1.2e-08 62.8 58 48.3
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.2e-08 62.8 55 50.9
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.2e-08 62.8 48 58.3
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 1.5e-08 62.4 61 50.8
Nitab4.5_0000106g0370 Nicotiana tabacum HOM05D039995 ORTHO05D007271 1.5e-08 62.4 38 63.2
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 1.5e-08 62.4 54 53.7
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 2.6e-08 61.6 47 61.7
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 3.4e-08 61.2 57 50.9
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.4e-08 61.2 56 46.4
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 3.4e-08 61.2 51 52.9
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 4.4e-08 60.8 61 50.8
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 4.4e-08 60.8 47 59.6
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 4.4e-08 60.8 47 59.6
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 4.4e-08 60.8 60 46.7
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 4.4e-08 60.8 39 64.1
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 5.8e-08 60.5 59 47.5
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 7.5e-08 60.1 52 57.7
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 7.5e-08 60.1 59 45.8
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 7.5e-08 60.1 57 52.6
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 9.8e-08 59.7 54 48.1
Lsat_1_v5_gn_6_43600 Lactuca sativa HOM05D007861 ORTHO05D007271 9.8e-08 59.7 41 63.4
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 9.8e-08 59.7 53 56.6
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.7e-07 58.9 45 60.0
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 1.7e-07 58.9 59 47.5
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 1.7e-07 58.9 46 58.7
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 1.7e-07 58.9 47 57.4
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 2.2e-07 58.5 46 58.7
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.2e-07 58.5 53 54.7
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 2.2e-07 58.5 53 54.7
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 2.9e-07 58.2 59 49.2
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 3.7e-07 57.8 47 61.7
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 3.7e-07 57.8 53 54.7
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 3.7e-07 57.8 47 61.7
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 4.9e-07 57.4 58 51.7
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 4.9e-07 57.4 58 51.7
Thhalv10011102m.g Eutrema salsugineum HOM05D009695 ORTHO05D007271 4.9e-07 57.4 35 68.6
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 4.9e-07 57.4 47 61.7
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 4.9e-07 57.4 39 61.5
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 4.9e-07 57.4 46 54.3
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 6.4e-07 57.0 48 54.2
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 6.4e-07 57.0 59 44.1
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 6.4e-07 57.0 59 44.1
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 6.4e-07 57.0 43 55.8
PGSC0003DMG400007440 Solanum tuberosum HOM05D009695 ORTHO05D007271 6.4e-07 57.0 54 51.9
CARHR120770 Cardamine hirsuta HOM05D014739 ORTHO05D007271 8.3e-07 56.6 44 54.5
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 8.3e-07 56.6 50 52.0
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 8.3e-07 56.6 49 57.1
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.1e-06 56.2 57 47.4
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 1.4e-06 55.8 42 59.5
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 1.4e-06 55.8 42 59.5
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 1.4e-06 55.8 42 59.5
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 1.4e-06 55.8 42 59.5
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 1.4e-06 55.8 46 52.2
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 1.4e-06 55.8 48 56.2
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 2.4e-06 55.1 42 54.8
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 3.2e-06 54.7 53 49.1
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 3.2e-06 54.7 54 51.9
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 4.1e-06 54.3 40 57.5
BcaC07g39776 Brassica carinata HOM05D009695 ORTHO05D007271 5.4e-06 53.9 34 67.6
C08p30020 Brassica napus HOM05D009695 ORTHO05D007271 5.4e-06 53.9 34 67.6
BolC8t50611H Brassica oleracea HOM05D009695 ORTHO05D007271 5.4e-06 53.9 34 67.6
ECA233G4124 Erigeron canadensis HOM05D007861 ORTHO05D007271 5.4e-06 53.9 40 62.5
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 5.4e-06 53.9 52 50.0
EL10Ac9g21645 Beta vulgaris HOM05D009695 ORTHO05D007271 7.0e-06 53.5 40 55.0
Zm00001eb419750 Zea mays HOM05D022601 ORTHO05D023448 7.0e-06 53.5 48 47.9
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 9.2e-06 53.1 50 48.0
BcaB01g00155 Brassica carinata HOM05D009695 ORTHO05D007271 9.2e-06 53.1 35 65.7
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 9.2e-06 53.1 39 59.0
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 9.2e-06 53.1 43 55.8


User provided reference genes

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