Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 7.1e-99 364.0 192 100.0
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 2.1e-95 352.4 192 97.4
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 2.4e-94 349.0 192 95.8
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 1.8e-86 322.8 197 87.3
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 1.0e-81 307.0 194 85.1
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 3.9e-81 305.1 192 84.9
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 1.5e-77 293.1 197 81.7
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 2.3e-65 252.7 200 72.5
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 3.7e-63 245.4 204 69.6
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 3.1e-62 242.3 170 77.6
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 2.0e-61 239.6 161 80.7
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 2.6e-61 239.2 163 79.8
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 1.0e-60 237.3 152 80.9
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.3e-60 236.9 204 68.1
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.3e-60 236.9 204 68.1
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 1.3e-60 236.9 156 82.1
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 2.9e-60 235.7 160 77.5
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 5.0e-60 235.0 207 68.1
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 6.5e-60 234.6 151 84.1
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 6.5e-60 234.6 160 81.9
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 8.5e-60 234.2 157 78.3
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 1.1e-59 233.8 179 73.7
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 1.1e-59 233.8 160 78.1
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 2.5e-59 232.6 157 80.3
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 2.5e-59 232.6 200 69.5
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 3.2e-59 232.3 162 78.4
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 3.2e-59 232.3 153 81.0
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 4.2e-59 231.9 155 80.0
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 5.5e-59 231.5 176 73.3
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 5.5e-59 231.5 159 80.5
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 7.2e-59 231.1 199 67.8
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 7.2e-59 231.1 161 79.5
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 7.2e-59 231.1 156 80.1
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 7.2e-59 231.1 201 67.2
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 9.4e-59 230.7 186 68.8
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 9.4e-59 230.7 157 77.1
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 1.6e-58 229.9 165 74.5
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 2.1e-58 229.6 165 77.6
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 2.7e-58 229.2 166 74.1
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 2.7e-58 229.2 164 75.0
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 3.6e-58 228.8 170 75.3
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 3.6e-58 228.8 160 77.5
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 6.1e-58 228.0 162 77.2
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 6.1e-58 228.0 161 77.6
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 6.1e-58 228.0 186 66.7
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 7.9e-58 227.6 175 72.0
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 7.9e-58 227.6 159 78.0
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 1.0e-57 227.3 168 74.4
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.0e-57 227.3 168 74.4
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.0e-57 227.3 168 75.0
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 1.4e-57 226.9 170 71.8
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 2.3e-57 226.1 154 80.5
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 2.3e-57 226.1 154 79.9
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 2.3e-57 226.1 162 75.3
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 3.0e-57 225.7 163 74.2
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 3.0e-57 225.7 163 74.2
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 3.0e-57 225.7 156 77.6
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 3.0e-57 225.7 194 69.1
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 3.9e-57 225.3 148 81.1
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 5.1e-57 224.9 154 79.9
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.1e-57 224.9 168 73.2
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 6.7e-57 224.6 163 73.6
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 6.7e-57 224.6 204 66.2
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 8.8e-57 224.2 168 73.2
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 1.1e-56 223.8 175 70.3
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.1e-56 223.8 175 71.4
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.1e-56 223.8 175 71.4
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 1.5e-56 223.4 200 65.0
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 1.5e-56 223.4 184 70.1
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.9e-56 223.0 161 73.9
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 1.9e-56 223.0 168 72.0
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 2.5e-56 222.6 194 64.9
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.5e-56 222.6 175 71.4
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 2.5e-56 222.6 152 78.9
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 3.3e-56 222.2 196 66.3
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 5.7e-56 221.5 162 77.2
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 5.7e-56 221.5 176 71.0
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 5.7e-56 221.5 156 73.1
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 7.4e-56 221.1 201 65.2
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 7.4e-56 221.1 194 68.6
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 9.7e-56 220.7 155 79.4
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 9.7e-56 220.7 199 63.8
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 1.3e-55 220.3 177 71.2
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 1.3e-55 220.3 177 71.2
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.3e-55 220.3 148 77.7
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 1.7e-55 219.9 183 67.2
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 2.2e-55 219.5 167 73.1
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 2.2e-55 219.5 161 73.3
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 2.8e-55 219.2 161 75.8
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 6.3e-55 218.0 161 74.5
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 1.4e-54 216.9 162 75.3
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 2.4e-54 216.1 162 74.7
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 5.3e-54 214.9 203 61.6
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 9.1e-54 214.2 133 83.5
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 2.6e-53 212.6 157 72.6
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 2.6e-53 212.6 161 72.0
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 1.0e-52 210.7 196 65.3
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 1.3e-52 210.3 157 73.2
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 1.3e-52 210.3 196 65.3
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 1.6e-50 203.4 177 62.7
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 3.9e-49 198.7 196 60.7
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 5.1e-49 198.4 146 73.3
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 6.7e-49 198.0 177 62.7
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 5.7e-48 194.9 148 70.3
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 5.7e-48 194.9 164 67.7
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 6.3e-47 191.4 117 84.6
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 1.4e-46 190.3 117 85.5
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 1.8e-46 189.9 160 65.0
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 4.1e-46 188.7 120 82.5
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.2e-45 187.2 119 79.0
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 1.7e-44 183.3 130 74.6
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 6.5e-44 181.4 141 66.0
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 1.7e-39 166.8 170 54.7
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 4.8e-39 165.2 109 78.9
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 5.0e-36 155.2 158 53.2
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 1.8e-33 146.7 142 54.2
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 2.3e-33 146.4 134 59.7
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 2.6e-32 142.9 154 57.1
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 5.7e-32 141.7 122 64.8
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 5.7e-32 141.7 87 85.1
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.3e-31 140.6 87 85.1
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 2.2e-31 139.8 87 83.9
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 5.5e-27 125.2 133 57.1
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 1.6e-26 123.6 86 75.6
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 4.7e-26 122.1 92 71.7
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 1.4e-22 110.5 78 74.4
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 3.8e-20 102.4 99 59.6
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 3.6e-18 95.9 57 78.9
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.0e-08 63.5 105 37.1
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 5.4e-06 55.5 123 34.1
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 7.0e-06 55.1 122 32.8
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 9.2e-06 54.7 116 30.2
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 9.2e-06 54.7 128 30.5


User provided reference genes

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