Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.2e-65 251.1 121 100.0
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 8.5e-42 173.7 105 84.8
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 1.6e-40 169.5 104 83.7
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 1.6e-40 169.5 104 83.7
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 2.2e-37 159.1 104 76.9
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 2.8e-37 158.7 105 77.1
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 6.3e-37 157.5 104 78.8
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 3.5e-35 151.8 107 75.7
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 2.5e-25 119.0 107 57.0
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 3.3e-25 118.6 108 57.4
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 4.3e-25 118.2 107 58.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 5.6e-25 117.9 107 55.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 2.1e-24 115.9 107 55.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 8.0e-24 114.0 107 54.2
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 8.0e-24 114.0 107 51.4
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 1.8e-23 112.8 108 52.8
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 2.3e-23 112.5 107 52.3
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 6.8e-23 110.9 107 57.0
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.2e-22 110.2 107 49.5
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 4.4e-22 108.2 107 53.3
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.4e-22 108.2 108 52.8
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.4e-22 108.2 108 52.8
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 4.4e-22 108.2 107 51.4
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 5.8e-22 107.8 107 56.1
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 7.5e-22 107.5 107 52.3
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 1.7e-21 106.3 107 51.4
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 2.9e-21 105.5 107 55.1
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 4.9e-21 104.8 108 50.0
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 1.1e-20 103.6 107 50.5
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 2.4e-20 102.4 106 46.2
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 3.2e-20 102.1 105 54.3
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 4.1e-20 101.7 106 47.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 4.1e-20 101.7 104 49.0
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 5.4e-20 101.3 107 51.4
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 7.0e-20 100.9 106 51.9
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 7.0e-20 100.9 106 49.1
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 9.2e-20 100.5 108 46.3
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 1.6e-19 99.8 108 48.1
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 2.0e-19 99.4 106 48.1
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 2.0e-19 99.4 107 49.5
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 2.0e-19 99.4 107 49.5
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 2.0e-19 99.4 107 49.5
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 2.7e-19 99.0 108 51.9
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 3.5e-19 98.6 106 45.3
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 3.5e-19 98.6 108 50.0
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 2.3e-18 95.9 107 49.5
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 3.0e-18 95.5 99 47.5
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 3.0e-18 95.5 99 47.5
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 3.0e-18 95.5 99 47.5
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 3.0e-18 95.5 99 47.5
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 3.0e-18 95.5 99 47.5
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 3.0e-18 95.5 106 46.2
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 3.9e-18 95.1 99 47.5
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 3.9e-18 95.1 103 46.6
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 3.9e-18 95.1 104 45.2
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 3.9e-18 95.1 105 47.6
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 3.9e-18 95.1 105 46.7
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 5.0e-18 94.7 103 52.4
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 6.6e-18 94.4 103 47.6
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 6.6e-18 94.4 103 50.5
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 1.5e-17 93.2 108 43.5
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 1.5e-17 93.2 99 48.5
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 1.9e-17 92.8 107 45.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 1.9e-17 92.8 99 47.5
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 2.5e-17 92.4 105 46.7
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 2.5e-17 92.4 105 46.7
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 2.5e-17 92.4 107 44.9
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 2.5e-17 92.4 107 46.7
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 4.3e-17 91.7 101 44.6
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 4.3e-17 91.7 106 51.9
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 4.3e-17 91.7 107 45.8
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 5.6e-17 91.3 103 44.7
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 5.6e-17 91.3 106 45.3
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 7.3e-17 90.9 104 43.3
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 7.3e-17 90.9 108 43.5
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 9.5e-17 90.5 110 46.4
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 1.2e-16 90.1 106 45.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.2e-16 90.1 105 45.7
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 1.2e-16 90.1 107 45.8
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 1.6e-16 89.7 106 46.2
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.6e-16 89.7 106 44.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 2.1e-16 89.4 98 44.9
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 2.1e-16 89.4 107 45.8
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 2.1e-16 89.4 107 45.8
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 2.1e-16 89.4 107 43.0
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 2.8e-16 89.0 107 43.0
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 3.6e-16 88.6 107 44.9
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.7e-16 88.2 105 45.7
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 8.1e-16 87.4 105 43.8
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.4e-15 86.7 102 47.1
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 1.4e-15 86.7 107 46.7
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.8e-15 86.3 98 43.9
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.8e-15 86.3 105 44.8
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 1.8e-15 86.3 106 46.2
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 3.1e-15 85.5 107 43.0
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 3.1e-15 85.5 56 78.6
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 4.0e-15 85.1 106 43.4
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 4.0e-15 85.1 46 73.9
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 5.2e-15 84.7 107 43.0
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 6.8e-15 84.3 103 46.6
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 6.8e-15 84.3 100 47.0
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 8.9e-15 84.0 108 43.5
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 3.4e-14 82.0 106 40.6
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 3.4e-14 82.0 107 42.1
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 4.4e-14 81.6 106 41.5
Sopen07g009810 Solanum pennellii HOM05D004682 ORTHO05D026186 9.2e-12 73.9 59 69.5
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 1.2e-11 73.6 108 38.0
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 7.8e-11 70.9 120 35.8
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 1.3e-10 70.1 107 42.1
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.1e-09 67.0 106 38.7
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.1e-09 67.0 106 38.7
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 1.6e-08 63.2 107 37.4
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 2.8e-08 62.4 108 37.0
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.1e-07 60.5 89 36.0
Sopen05g017680 Solanum pennellii HOM05D056827 ORTHO05D026186 3.1e-07 58.9 34 82.4
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 6.8e-07 57.8 107 34.6


User provided reference genes

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