Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 4.2e-105 384.8 206 100.0
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 2.1e-101 372.5 206 97.6
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 5.3e-100 367.9 206 96.1
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.0e-87 325.5 217 83.9
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 6.7e-87 324.3 221 83.7
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 3.8e-82 308.5 221 78.3
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 3.6e-72 275.4 218 71.1
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.5e-70 269.2 219 70.3
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.5e-70 269.2 219 70.3
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 7.4e-70 267.7 226 68.1
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 5.9e-67 258.1 207 72.5
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 1.3e-66 256.9 182 75.3
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 2.2e-66 256.1 203 70.4
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 2.9e-66 255.8 206 69.9
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 1.1e-65 253.8 200 73.0
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 1.9e-65 253.1 212 68.4
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.9e-65 253.1 207 69.6
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.2e-65 252.3 190 71.1
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 7.2e-65 251.1 220 67.3
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 7.2e-65 251.1 179 76.0
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 1.6e-64 250.0 179 75.4
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.6e-64 250.0 179 75.4
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 2.1e-64 249.6 199 70.4
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.7e-64 249.2 203 68.5
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 2.7e-64 249.2 205 69.3
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 2.7e-64 249.2 182 75.8
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 6.1e-64 248.1 187 71.7
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 6.1e-64 248.1 205 68.8
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 1.0e-63 247.3 183 73.8
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 1.4e-63 246.9 206 68.9
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 1.4e-63 246.9 216 64.8
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 1.8e-63 246.5 205 68.8
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 1.8e-63 246.5 206 67.5
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 3.9e-63 245.4 184 74.5
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 3.9e-63 245.4 182 72.5
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 8.8e-63 244.2 223 63.7
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 8.8e-63 244.2 196 68.9
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 1.5e-62 243.4 189 70.9
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 2.0e-62 243.0 187 71.1
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 2.0e-62 243.0 192 70.8
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 2.6e-62 242.7 196 68.9
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 3.3e-62 242.3 201 69.2
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 7.4e-62 241.1 184 73.9
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 1.3e-61 240.4 209 70.8
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.3e-61 240.4 207 66.7
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 3.7e-61 238.8 178 74.2
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 3.7e-61 238.8 185 73.0
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 1.4e-60 236.9 182 73.6
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 1.4e-60 236.9 182 73.6
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 1.4e-60 236.9 182 73.6
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 1.4e-60 236.9 170 75.3
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 1.8e-60 236.5 212 66.0
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 2.4e-60 236.1 221 62.9
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 6.9e-60 234.6 151 83.4
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 9.1e-60 234.2 192 71.9
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 1.2e-59 233.8 178 73.0
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 1.2e-59 233.8 210 65.2
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 1.5e-59 233.4 180 73.3
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 1.5e-59 233.4 211 64.0
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 2.0e-59 233.0 156 80.1
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 3.4e-59 232.3 215 65.6
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 5.9e-59 231.5 182 72.5
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 5.9e-59 231.5 166 75.3
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 5.9e-59 231.5 183 72.1
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 1.0e-58 230.7 200 69.0
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 1.0e-58 230.7 156 81.4
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 1.3e-58 230.3 180 71.7
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 1.3e-58 230.3 190 71.1
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 1.3e-58 230.3 177 74.0
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 1.3e-58 230.3 179 71.5
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 1.7e-58 229.9 216 65.3
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 3.8e-58 228.8 182 71.4
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 8.5e-58 227.6 180 70.6
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 4.2e-57 225.3 196 66.3
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 7.2e-57 224.6 220 59.5
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 1.2e-56 223.8 148 80.4
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 2.7e-56 222.6 193 65.3
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 3.0e-55 219.2 217 60.4
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 2.6e-54 216.1 196 66.3
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 4.4e-54 215.3 178 70.2
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 9.7e-54 214.2 178 69.7
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 1.7e-53 213.4 206 61.2
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 2.8e-53 212.6 173 68.8
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 2.8e-53 212.6 189 65.1
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 3.8e-50 202.2 209 56.9
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 1.1e-49 200.7 166 69.3
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 5.5e-49 198.4 199 60.3
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.3e-45 187.2 217 56.7
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 4.8e-45 185.3 150 68.0
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 6.5e-42 174.9 158 65.2
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 1.1e-41 174.1 212 55.2
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 1.0e-39 167.5 164 59.1
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 1.8e-39 166.8 174 57.5
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 2.3e-39 166.4 118 76.3
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 3.4e-38 162.5 107 81.3
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 1.7e-37 160.2 108 75.9
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 1.0e-26 124.4 82 81.7
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 6.6e-26 121.7 82 80.5
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 8.0e-24 114.8 104 60.6
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 5.2e-23 112.1 132 45.5
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 3.7e-21 105.9 87 65.5
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 3.7e-21 105.9 103 63.1
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 8.3e-21 104.8 74 74.3
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 1.2e-19 100.9 77 68.8
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 4.3e-17 92.4 58 86.2
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 4.7e-16 89.0 112 43.8
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 2.3e-10 70.1 48 75.0
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 3.0e-10 69.7 46 78.3
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 9.5e-09 64.7 103 41.7
Sc03g0008980 Simmondsia chinensis HOM05D007184 ORTHO05D008987 3.6e-08 62.8 43 72.1
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 4.7e-08 62.4 102 36.3
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 3.4e-06 56.2 37 75.7
AagrBONN_evm.TU.Sc2ySwM_117.1655 Anthoceros agrestis HOM05D007184 ORTHO05D008987 7.5e-06 55.1 89 38.2


User provided reference genes

Program Settings