Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 2.7e-51 204.9 96 100.0
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 4.1e-39 164.5 92 82.6
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 1.2e-38 162.9 92 81.5
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 5.9e-38 160.6 92 80.4
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 1.0e-37 159.8 78 93.6
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.0e-37 159.8 92 80.4
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.9e-37 158.3 92 79.3
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.9e-37 158.3 92 79.3
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.9e-37 158.3 92 79.3
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.9e-37 158.3 92 79.3
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 3.9e-37 157.9 92 80.4
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 3.9e-37 157.9 92 80.4
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 5.0e-37 157.5 78 92.3
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 6.6e-37 157.1 92 78.3
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 6.6e-37 157.1 92 79.3
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 8.6e-37 156.8 92 78.3
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 8.6e-37 156.8 92 78.3
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 8.6e-37 156.8 92 78.3
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 8.6e-37 156.8 92 78.3
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 8.6e-37 156.8 92 78.3
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 8.6e-37 156.8 92 78.3
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-36 156.4 78 91.0
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 1.1e-36 156.4 92 77.2
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.1e-36 156.4 92 77.2
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 1.1e-36 156.4 92 77.2
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-36 156.0 92 78.3
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.9e-36 155.6 92 77.2
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.9e-36 155.6 92 77.2
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 1.9e-36 155.6 92 79.3
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 3.3e-36 154.8 78 92.3
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 3.3e-36 154.8 92 76.1
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 3.3e-36 154.8 92 76.1
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 3.3e-36 154.8 92 77.2
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 5.6e-36 154.1 92 78.3
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 5.6e-36 154.1 92 78.3
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 5.6e-36 154.1 92 75.0
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 7.3e-36 153.7 78 89.7
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 9.5e-36 153.3 92 76.1
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.2e-35 152.9 89 77.5
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.2e-35 152.9 92 77.2
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 2.1e-35 152.1 92 76.1
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 2.1e-35 152.1 92 76.1
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 2.1e-35 152.1 92 76.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 2.8e-35 151.8 78 87.2
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 2.8e-35 151.8 92 75.0
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.7e-35 151.0 87 79.3
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 4.7e-35 151.0 92 73.9
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 6.1e-35 150.6 91 76.9
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 6.1e-35 150.6 92 75.0
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 6.1e-35 150.6 92 73.9
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 8.0e-35 150.2 92 76.1
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 1.0e-34 149.8 92 73.9
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 1.8e-34 149.1 87 79.3
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 6.8e-34 147.1 92 75.0
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 6.8e-34 147.1 88 77.3
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 6.8e-34 147.1 88 77.3
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 6.8e-34 147.1 88 77.3
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 8.9e-34 146.7 82 80.5
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 8.9e-34 146.7 92 75.0
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 2.0e-33 145.6 87 78.2
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 2.0e-33 145.6 75 86.7
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 3.4e-33 144.8 87 77.0
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 3.4e-33 144.8 87 77.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 3.4e-33 144.8 74 87.8
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 4.4e-33 144.4 78 85.9
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 9.8e-33 143.3 92 70.7
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.3e-32 142.9 89 73.0
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 2.2e-32 142.1 73 89.0
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 3.7e-32 141.4 72 87.5
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 6.4e-32 140.6 92 70.7
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 1.1e-31 139.8 87 73.6
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 5.4e-31 137.5 87 73.6
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 1.6e-30 136.0 90 68.9
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 1.6e-30 136.0 78 80.8
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 2.0e-30 135.6 84 76.2
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 2.7e-30 135.2 91 69.2
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 1.0e-29 133.3 68 89.7
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.0e-29 133.3 92 67.4
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.0e-29 133.3 92 67.4
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 8.6e-29 130.2 76 78.9
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 8.6e-29 130.2 76 78.9
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.5e-28 128.6 76 77.6
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 3.3e-28 128.3 76 77.6
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 4.7e-27 124.4 65 86.2
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 8.0e-27 123.6 59 89.8
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 8.0e-27 123.6 77 74.0
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 8.0e-27 123.6 77 74.0
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 8.0e-27 123.6 77 74.0
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 2.3e-26 122.1 76 76.3
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.6e-25 118.6 57 89.5
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 3.4e-25 118.2 60 90.0
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.1e-23 113.2 59 84.7
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 3.2e-23 111.7 67 79.1
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 4.1e-23 111.3 91 63.7
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 5.4e-23 110.9 72 72.2
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.8e-22 107.1 57 86.0
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 2.5e-20 102.1 53 83.0
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.5e-20 102.1 67 73.1
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 9.5e-20 100.1 67 73.1
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 2.8e-19 98.6 50 90.0
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.3e-18 95.5 50 86.0
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.1e-18 95.1 92 51.1
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.1e-18 95.1 92 51.1
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 3.1e-18 95.1 92 51.1
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 6.8e-18 94.0 75 65.3
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 3.4e-17 91.7 87 55.2
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 5.8e-17 90.9 47 87.2
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.1e-15 86.7 75 58.7
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.1e-15 86.7 45 86.7
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 1.4e-15 86.3 44 86.4
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 1.3e-13 79.7 48 75.0
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.3e-13 79.0 72 54.2
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 7.3e-12 73.9 50 70.0
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 9.6e-12 73.6 51 70.6
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.6e-11 72.8 91 50.5
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.8e-10 69.3 46 67.4
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.4e-10 68.9 35 88.6
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 2.0e-09 65.9 68 52.9
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 7.6e-09 63.9 34 85.3
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-07 60.1 68 44.1
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 2.1e-06 55.8 41 65.9


User provided reference genes

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