Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019174 Solanum tuberosum HOM05D007530 ORTHO05D009556 2.4e-31 138.3 73 100.0
Solyc10g085215.1 Solanum lycopersicum HOM05D007530 ORTHO05D009556 3.1e-23 111.3 73 75.3
PGSC0003DMG400011024 Solanum tuberosum HOM05D007530 ORTHO05D009556 4.1e-23 110.9 73 75.3
Sopen10g034690 Solanum pennellii HOM05D007530 ORTHO05D009556 5.4e-23 110.5 73 75.3
Nitab4.5_0003514g0010 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.0e-21 106.3 73 74.0
Lalb_Chr01g0023151 Lupinus albus HOM05D007530 ORTHO05D009556 1.7e-21 105.5 70 74.3
Nitab4.5_0000444g0050 Nicotiana tabacum HOM05D007530 ORTHO05D009556 1.7e-21 105.5 73 74.0
Migut.L02025 Erythranthe guttata HOM05D007530 ORTHO05D009556 2.9e-21 104.8 73 71.2
Glyma.18G203200 Glycine max HOM05D007530 ORTHO05D009556 3.8e-21 104.4 73 69.9
Glyma.16G098900 Glycine max HOM05D007530 ORTHO05D009556 8.6e-21 103.2 73 69.9
Glyma.07G152100 Glycine max HOM05D007530 ORTHO05D009556 1.9e-20 102.1 73 69.9
unitig_37.g12653 Utricularia gibba HOM05D007530 ORTHO05D009556 9.5e-20 99.8 73 65.8
Thhalv10015199m.g Eutrema salsugineum HOM05D007530 ORTHO05D009556 1.2e-19 99.4 73 67.1
TAR623G0260 Trochodendron aralioides HOM05D007530 ORTHO05D009556 1.2e-19 99.4 70 68.6
Sp6g40660 Schrenkiella parvula HOM05D007530 ORTHO05D009556 1.6e-19 99.0 70 68.6
Nitab4.5_0000770g0040 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.1e-19 98.6 67 71.6
Phvul.008G096700 Phaseolus vulgaris HOM05D007530 ORTHO05D009556 2.1e-19 98.6 70 65.7
Potri.016G118800 Populus trichocarpa HOM05D007530 ORTHO05D009556 3.6e-19 97.8 69 66.7
Sed0024664 Sechium edule HOM05D007530 ORTHO05D009556 3.6e-19 97.8 70 67.1
Hma1.2p1_0362F.1_g136440 Hydrangea macrophylla HOM05D007530 ORTHO05D009556 4.7e-19 97.4 67 68.7
SalBow4G2966 Salvia bowleyana HOM05D007530 ORTHO05D009556 4.7e-19 97.4 73 67.1
BcaB01g06225 Brassica carinata HOM05D007530 ORTHO05D009556 6.1e-19 97.1 70 67.1
Carub.0006s0047 Capsella rubella HOM05D007530 ORTHO05D009556 6.1e-19 97.1 73 65.8
Potri.006G101901 Populus trichocarpa HOM05D007530 ORTHO05D009556 1.0e-18 96.3 69 65.2
CARHR211730 Cardamine hirsuta HOM05D007530 ORTHO05D009556 1.8e-18 95.5 70 65.7
Lalb_Chr19g0124461 Lupinus albus HOM05D007530 ORTHO05D009556 1.8e-18 95.5 64 71.9
Nitab4.5_0004107g0030 Nicotiana tabacum HOM05D007530 ORTHO05D009556 2.3e-18 95.1 67 67.2
Ca_07655_v3 Cicer arietinum L. HOM05D007530 ORTHO05D009556 3.0e-18 94.7 70 65.7
Manes.08G093800 Manihot esculenta HOM05D007530 ORTHO05D009556 4.0e-18 94.4 69 63.8
Nn2g13162 Nelumbo nucifera HOM05D007530 ORTHO05D009556 4.0e-18 94.4 70 68.6
AL6G10780 Arabidopsis lyrata HOM05D007530 ORTHO05D009556 5.2e-18 94.0 70 64.3
AT5G01350 Arabidopsis thaliana HOM05D007530 ORTHO05D009556 5.2e-18 94.0 70 64.3
Medtr7g068940 Medicago truncatula HOM05D007530 ORTHO05D009556 5.2e-18 94.0 69 63.8
CsaV3_3G033590 Cucumis sativus L. HOM05D007530 ORTHO05D009556 6.8e-18 93.6 68 64.7
Manes.09G107300 Manihot esculenta HOM05D007530 ORTHO05D009556 6.8e-18 93.6 69 63.8
Aa31LG1G23010 Aethionema arabicum HOM05D007530 ORTHO05D009556 1.2e-17 92.8 69 65.2
Aa31LG5G18900 Aethionema arabicum HOM05D007530 ORTHO05D009556 1.2e-17 92.8 70 62.9
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 1.2e-17 92.8 71 64.8
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 1.2e-17 92.8 71 64.8
CiPaw.10G157500 Carya illinoinensis HOM05D007530 ORTHO05D009556 1.2e-17 92.8 70 62.9
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 1.5e-17 92.4 64 70.3
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 1.5e-17 92.4 64 70.3
MELO3C009149.2 Cucumis melo HOM05D007530 ORTHO05D009556 1.5e-17 92.4 68 63.2
Psat3g126880 Pisum sativum HOM05D007530 ORTHO05D009556 1.5e-17 92.4 70 61.4
Prupe.6G279800 Prunus persica HOM05D007530 ORTHO05D009556 1.5e-17 92.4 73 58.9
Rhsim05G0217200 Rhododendron simsii HOM05D000043 ORTHO05D005398 1.5e-17 92.4 64 68.8
arahy.Tifrunner.gnm1.ann1.88RA0A Arachis hypogaea HOM05D007530 ORTHO05D009556 2.0e-17 92.0 71 66.2
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 5.7e-17 90.5 70 64.3
Gohir.A04G092400 Gossypium hirsutum HOM05D007530 ORTHO05D009556 7.5e-17 90.1 68 64.7
Gohir.D04G131700 Gossypium hirsutum HOM05D007530 ORTHO05D009556 7.5e-17 90.1 68 64.7
arahy.Tifrunner.gnm1.ann1.ZMF41F Arachis hypogaea HOM05D007530 ORTHO05D009556 1.3e-16 89.4 71 64.8
GSVIVG01011181001 Vitis vinifera HOM05D007530 ORTHO05D009556 1.3e-16 89.4 73 58.9
PSO384G0267 Papaver somniferum HOM05D007530 ORTHO05D009556 1.7e-16 89.0 67 61.2
THA.LOC109117252 Tarenaya hassleriana HOM05D007530 ORTHO05D009556 1.7e-16 89.0 67 59.7
Gorai.012G115500 Gossypium raimondii HOM05D007530 ORTHO05D009556 2.2e-16 88.6 67 64.2
Thecc.05G013400 Theobroma cacao HOM05D007530 ORTHO05D009556 2.8e-16 88.2 65 64.6
HPP92_021347 Vanilla planifolia HOM05D007530 ORTHO05D009556 2.8e-16 88.2 64 65.6
Hund10987 Selenicereus undatus HOM05D007530 ORTHO05D009556 3.7e-16 87.8 70 62.9
Sc01g0006890 Simmondsia chinensis HOM05D007530 ORTHO05D009556 3.7e-16 87.8 70 60.0
HPP92_021352 Vanilla planifolia HOM05D007530 ORTHO05D009556 3.7e-16 87.8 64 65.6
arahy.Tifrunner.gnm1.ann1.R0LR40 Arachis hypogaea HOM05D007530 ORTHO05D009556 4.9e-16 87.4 64 65.6
Sabra06G0078200 Salix brachista HOM05D007530 ORTHO05D009556 8.3e-16 86.7 64 60.9
CANSAT35G1517 Cannabis sativa HOM05D007530 ORTHO05D009556 1.1e-15 86.3 68 57.4
ECA247G1901 Erigeron canadensis HOM05D007530 ORTHO05D009556 1.4e-15 85.9 65 60.0
CSS0025168 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 3.2e-15 84.7 64 62.5
ClCG10G022290 Citrullus lanatus HOM05D007530 ORTHO05D009556 5.4e-15 84.0 64 57.8
FvH4_6g11210 Fragaria vesca HOM05D007530 ORTHO05D009556 7.0e-15 83.6 73 57.5
FAN02G2108 Fragaria x ananassa HOM05D007530 ORTHO05D009556 7.0e-15 83.6 67 56.7
FAN09G3168 Fragaria x ananassa HOM05D007530 ORTHO05D009556 7.0e-15 83.6 73 57.5
FAN14G2496 Fragaria x ananassa HOM05D007530 ORTHO05D009556 7.0e-15 83.6 73 57.5
FAN14G3881 Fragaria x ananassa HOM05D007530 ORTHO05D009556 7.0e-15 83.6 73 57.5
RcHm_v2.0_Chr3g0462691 Rosa chinensis HOM05D007530 ORTHO05D009556 7.0e-15 83.6 67 56.7
MD12G1171600 Malus domestica HOM05D007530 ORTHO05D009556 9.2e-15 83.2 74 58.1
Duzib093G1475 Durio zibethinus HOM05D007530 ORTHO05D009556 1.2e-14 82.8 70 61.4
MBI15_g24380_MAGBIO Magnolia biondii HOM05D007530 ORTHO05D009556 1.2e-14 82.8 70 54.3
PGR142G0763 Punica granatum HOM05D007530 ORTHO05D009556 1.2e-14 82.8 65 56.9
Duzib106G1059 Durio zibethinus HOM05D007530 ORTHO05D009556 2.7e-14 81.6 70 60.0
ATR0681G213 Amborella trichopoda HOM05D007530 ORTHO05D009556 3.5e-14 81.3 70 57.1
COL.COLO4_14508 Corchorus olitorius HOM05D002620 ORTHO05D006469 4.6e-14 80.9 64 57.8
FAN05G2692 Fragaria x ananassa HOM05D007530 ORTHO05D009556 5.9e-14 80.5 64 57.8
TWI74G1090 Tripterygium wilfordii HOM05D007530 ORTHO05D009556 2.9e-13 78.2 65 56.9
HanXRQChr10g0294071 Helianthus annuus HOM05D007530 ORTHO05D009556 3.9e-13 77.8 65 52.3
EL10Ac5g12543 Beta vulgaris HOM05D007530 ORTHO05D009556 6.6e-13 77.0 70 51.4
Mapoly0015s0144 Marchantia polymorpha HOM05D007530 ORTHO05D009556 8.6e-13 76.6 69 53.6
Pp3c21_22550 Physcomitrium patens HOM05D007530 ORTHO05D009556 8.6e-13 76.6 67 58.2
Cc06_g01140 Coffea canephora HOM05D007530 ORTHO05D009556 1.1e-12 76.3 45 80.0
Haze_21023 Corylus avellana HOM05D002620 ORTHO05D006469 2.5e-12 75.1 86 50.0
TPR.G2527 Trifolium pratense HOM05D007530 ORTHO05D009556 3.3e-12 74.7 72 55.6
Os04g0508100 Oryza sativa ssp. japonica HOM05D007530 ORTHO05D009556 2.8e-11 71.6 70 47.1
Eucgr.G03069 Eucalyptus grandis HOM05D007530 ORTHO05D009556 8.0e-11 70.1 44 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3278 Anthoceros agrestis HOM05D007530 ORTHO05D009556 3.1e-10 68.2 65 47.7
Aqoxy2G00850 Aquilegia oxysepala HOM05D007530 ORTHO05D009556 3.1e-10 68.2 70 42.9
Peaxi162Scf00014g00124 Petunia axillaris HOM05D007530 ORTHO05D009556 3.1e-10 68.2 45 75.6
Zm00001eb426270 Zea mays HOM05D007530 ORTHO05D009556 4.4e-09 64.3 67 44.8
CAN.G243.17 Capsicum annuum HOM05D007530 ORTHO05D009556 7.5e-09 63.5 45 66.7
vmacro20294 Vaccinium macrocarpon HOM05D007530 ORTHO05D009556 6.4e-08 60.5 45 62.2
Lsat_1_v5_gn_9_35161 Lactuca sativa HOM05D007530 ORTHO05D009556 1.1e-07 59.7 68 41.2
Oeu033582.2 Olea europaea HOM05D007530 ORTHO05D009556 2.4e-07 58.5 53 64.2
Solyc10g076565.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 4.1e-07 57.8 34 85.3
CSS0006801 Camellia sinensis var. sinensis HOM05D007530 ORTHO05D009556 9.2e-07 56.6 45 62.2
arahy.Tifrunner.gnm1.ann1.K2ZES1 Arachis hypogaea HOM05D008645 ORTHO05D009556 6.0e-06 53.9 46 63.0


User provided reference genes

Program Settings