Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 5.6e-273 943.7 498 100.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.6e-195 686.4 506 77.1
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.4e-186 656.8 496 74.4
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.6e-182 641.7 496 73.8
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 8.1e-163 577.8 503 66.8
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.2e-151 538.9 348 84.8
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.4e-146 523.1 506 62.5
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 3.1e-146 522.7 506 62.1
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.6e-145 519.6 506 62.3
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.1e-124 451.1 288 84.4
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 3.7e-123 446.0 512 53.9
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.7e-120 437.2 510 51.8
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.4e-117 427.6 535 52.3
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.9e-117 426.0 510 51.8
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 7.4e-116 421.8 438 59.6
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.4e-109 401.0 506 51.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 9.7e-108 394.8 503 50.7
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 8.2e-107 391.7 503 50.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.9e-104 383.3 502 49.8
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.4e-101 374.4 503 48.3
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.0e-101 372.9 517 47.4
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 4.0e-101 372.9 513 47.0
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 8.8e-101 371.7 427 53.9
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 7.5e-100 368.6 502 48.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 9.7e-100 368.2 505 46.9
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.8e-99 365.9 510 46.1
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 6.3e-99 365.5 503 46.7
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.1e-98 362.8 510 46.1
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.5e-97 359.8 499 48.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 7.7e-97 358.6 513 47.6
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.5e-96 355.1 511 45.6
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.1e-94 350.5 525 47.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 8.0e-94 348.6 504 47.6
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.0e-93 348.2 510 45.9
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 2.3e-93 347.1 506 46.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 5.2e-93 345.9 508 45.5
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 9.8e-92 341.7 506 44.5
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.1e-90 336.3 520 44.4
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 5.4e-90 335.9 509 44.2
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 7.0e-90 335.5 501 46.5
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 2.9e-88 330.1 508 44.9
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.5e-87 327.8 483 44.1
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 2.5e-87 327.0 508 45.3
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.5e-87 327.0 515 44.5
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 7.2e-87 325.5 513 42.9
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 7.2e-87 325.5 513 43.5
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.6e-86 324.3 506 43.7
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.1e-86 323.9 514 43.6
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.4e-85 321.2 509 43.4
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.8e-85 320.9 511 44.8
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.5e-84 317.8 517 42.4
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 2.6e-84 317.0 505 43.0
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 2.6e-84 317.0 509 43.0
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.1e-82 311.6 512 43.6
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.8e-82 310.8 505 43.2
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 2.7e-81 307.0 510 43.5
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 7.7e-81 305.4 505 44.8
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.9e-80 303.5 513 44.8
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 8.6e-80 302.0 505 43.2
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.5e-79 300.4 504 42.1
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.6e-78 296.6 513 43.3
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 6.1e-78 295.8 511 43.4
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.4e-77 294.7 419 48.2
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 3.0e-77 293.5 445 47.0
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 2.0e-76 290.8 446 44.8
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 2.6e-76 290.4 527 40.4
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.4e-76 289.7 532 40.8
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 4.4e-76 289.7 510 42.9
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 5.7e-76 289.3 495 42.0
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 9.8e-76 288.5 506 44.1
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.9e-75 287.0 491 41.8
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.8e-74 284.3 536 40.9
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 3.2e-74 283.5 506 42.3
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 5.4e-74 282.7 499 42.1
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 9.2e-74 282.0 516 41.1
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.0e-72 276.2 516 41.3
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.5e-71 273.9 506 40.7
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 2.5e-71 273.9 509 42.6
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 5.6e-71 272.7 510 40.4
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 7.3e-71 272.3 516 40.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 7.3e-71 272.3 513 38.4
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 3.6e-70 270.0 510 38.6
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.0e-69 266.5 513 39.2
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.2e-68 265.0 530 40.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 4.4e-68 263.1 513 40.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.3e-67 261.5 495 42.0
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.2e-67 260.8 511 37.8
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 2.2e-67 260.8 512 40.6
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.1e-66 258.5 514 39.7
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.1e-66 258.5 512 39.8
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 4.1e-66 256.5 511 37.0
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 7.0e-66 255.8 510 39.8
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.7e-65 253.8 526 37.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.6e-65 253.1 536 38.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.0e-64 251.9 484 39.5
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 2.3e-64 250.8 522 36.8
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.1e-63 248.4 445 40.7
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-62 244.6 532 37.2
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.4e-61 241.5 480 41.2
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.4e-61 241.5 356 42.7
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.1e-61 240.4 462 39.2
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 3.1e-61 240.4 437 38.9
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 5.2e-61 239.6 432 41.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 6.8e-61 239.2 530 37.7
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.2e-60 238.4 512 39.3
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.5e-60 238.0 517 39.1
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 3.4e-60 236.9 478 38.3
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 5.8e-60 236.1 440 41.6
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 7.5e-60 235.7 353 45.9
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 3.2e-58 230.3 427 40.7
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.5e-57 226.9 421 41.6
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.3e-56 224.9 449 37.9
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 8.1e-54 215.7 427 40.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.4e-53 214.9 515 37.9
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.8e-53 214.5 431 39.4
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.2e-53 213.0 506 37.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 2.0e-52 211.1 453 37.7
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 3.4e-52 210.3 428 40.0
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.8e-51 206.8 410 37.1
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 8.4e-51 205.7 509 35.6
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.4e-50 204.1 457 37.4
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.0e-48 198.7 434 38.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 9.6e-47 192.2 459 37.5
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 9.6e-47 192.2 504 35.9
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.2e-46 191.8 456 37.9
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.6e-46 191.4 400 38.8
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 6.2e-46 189.5 165 69.7
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.8e-45 188.0 452 36.3
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 4.0e-45 186.8 467 37.0
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.5e-44 184.9 494 33.2
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.4e-44 183.3 474 35.2
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 7.1e-42 176.0 493 33.7
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 4.3e-39 166.8 431 36.0
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 7.3e-39 166.0 377 35.5
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.1e-38 164.5 407 35.9
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.8e-37 161.4 407 35.9
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.4e-37 161.0 407 35.6
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 8.4e-35 152.5 124 66.9
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.1e-34 152.1 403 33.3
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.2e-33 148.7 475 30.9
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.6e-33 148.3 370 33.5
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 2.3e-32 144.4 307 37.8
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 5.3e-29 133.3 137 55.5
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 6.9e-29 132.9 362 34.8
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 2.6e-28 131.0 426 31.7
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.7e-27 128.3 146 51.4
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 6.4e-27 126.3 224 41.5
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 3.2e-26 124.0 516 29.5
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 5.1e-24 116.7 448 33.0
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.1e-22 111.3 176 42.0
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 4.8e-22 110.2 140 43.6
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 5.3e-21 106.7 290 34.8
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.0e-20 104.8 221 32.6
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.6e-20 104.4 524 26.1
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 3.4e-20 104.0 539 27.6
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.5e-15 88.6 184 40.2
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.7e-15 86.7 216 33.8
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 4.5e-12 77.0 328 29.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 4.5e-12 77.0 261 29.1
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.9e-12 76.6 210 31.9
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.2e-11 74.7 293 25.9
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 2.2e-11 74.7 53 64.2
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 9.3e-10 69.3 72 48.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.6e-09 68.6 239 26.4
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.6e-09 68.6 230 30.4
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 3.6e-09 67.4 132 37.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 6.1e-09 66.6 396 29.0
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.0e-08 65.9 43 74.4
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.0e-08 65.9 95 42.1
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.3e-08 64.7 218 30.3
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.1e-08 63.5 222 31.5
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.5e-07 62.0 118 33.1
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.2e-06 58.2 320 24.7
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 3.7e-06 57.4 88 38.6


User provided reference genes

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