Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 3.9e-54 214.5 109 100.0
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 4.1e-51 204.5 109 94.5
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 2.5e-48 195.3 109 92.7
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 3.2e-48 194.9 109 92.7
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.4e-43 178.7 108 82.4
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 5.9e-42 174.1 108 79.6
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.1e-40 169.9 108 78.7
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 2.7e-26 122.1 105 51.4
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 8.6e-25 117.1 100 57.0
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 3.3e-24 115.2 102 52.9
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 2.1e-23 112.5 102 51.0
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 3.6e-23 111.7 94 57.4
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 3.6e-23 111.7 100 52.0
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 3.6e-23 111.7 100 53.0
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 4.7e-23 111.3 94 54.3
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 6.1e-23 110.9 103 49.5
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 8.0e-23 110.5 100 52.0
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.3e-22 109.0 94 53.2
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 3.0e-22 108.6 94 51.1
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 4.0e-22 108.2 100 50.0
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 4.0e-22 108.2 100 53.0
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 6.8e-22 107.5 98 51.0
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.5e-21 106.3 107 47.7
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 2.0e-21 105.9 96 53.1
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 2.6e-21 105.5 94 52.1
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 2.6e-21 105.5 94 53.2
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 2.6e-21 105.5 96 53.1
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 2.6e-21 105.5 107 46.7
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 2.6e-21 105.5 102 52.0
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 3.4e-21 105.1 98 50.0
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 5.7e-21 104.4 99 49.5
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 7.5e-21 104.0 101 52.5
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.3e-20 103.2 100 48.0
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 1.3e-20 103.2 102 45.1
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 2.2e-20 102.4 102 48.0
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 4.9e-20 101.3 102 46.1
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 4.9e-20 101.3 100 51.0
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 6.3e-20 100.9 105 48.6
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 6.3e-20 100.9 105 48.6
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 8.3e-20 100.5 101 48.5
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 8.3e-20 100.5 98 51.0
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.1e-19 100.1 106 49.1
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.1e-19 100.1 100 44.0
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 1.8e-19 99.4 101 47.5
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 2.4e-19 99.0 100 47.0
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 5.4e-19 97.8 104 46.2
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 5.4e-19 97.8 95 46.3
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 5.4e-19 97.8 107 46.7
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 5.4e-19 97.8 98 42.9
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 9.2e-19 97.1 98 42.9
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 9.2e-19 97.1 98 42.9
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 9.2e-19 97.1 98 42.9
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 9.2e-19 97.1 98 42.9
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.0e-18 95.9 93 46.2
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 2.0e-18 95.9 101 50.5
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 2.7e-18 95.5 98 42.9
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 4.5e-18 94.7 104 44.2
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 5.9e-18 94.4 102 44.1
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 5.9e-18 94.4 95 46.3
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 5.9e-18 94.4 101 46.5
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 7.8e-18 94.0 99 44.4
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 1.0e-17 93.6 99 44.4
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 1.0e-17 93.6 99 44.4
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.3e-17 93.2 101 46.5
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 1.3e-17 93.2 94 46.8
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 1.3e-17 93.2 100 43.0
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 1.3e-17 93.2 95 45.3
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 1.3e-17 93.2 94 43.6
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.7e-17 92.8 107 43.0
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.7e-17 92.8 100 46.0
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.7e-17 92.8 108 42.6
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.9e-17 92.0 103 41.7
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 2.9e-17 92.0 101 45.5
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 3.8e-17 91.7 100 48.0
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 6.6e-17 90.9 99 43.4
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 6.6e-17 90.9 102 41.2
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 8.6e-17 90.5 105 41.0
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 8.6e-17 90.5 105 41.0
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 8.6e-17 90.5 103 40.8
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 1.1e-16 90.1 101 44.6
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.1e-16 90.1 101 44.6
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 1.5e-16 89.7 106 42.5
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 1.5e-16 89.7 95 43.2
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 2.5e-16 89.0 94 43.6
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 3.3e-16 88.6 95 43.2
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 5.6e-16 87.8 101 44.6
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 7.3e-16 87.4 106 41.5
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 7.3e-16 87.4 106 41.5
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 7.3e-16 87.4 102 44.1
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 7.3e-16 87.4 102 44.1
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 1.2e-15 86.7 84 46.4
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 4.7e-15 84.7 102 41.2
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 6.1e-15 84.3 101 43.6
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 6.1e-15 84.3 68 58.8
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 3.0e-14 82.0 107 40.2
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 6.8e-14 80.9 97 42.3
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 2.0e-13 79.3 99 39.4
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.4e-13 78.6 77 50.6
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 5.8e-13 77.8 100 39.0
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 5.8e-13 77.8 99 40.4
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 1.3e-12 76.6 102 40.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 3.7e-12 75.1 101 37.6
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 3.7e-12 75.1 107 37.4
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 9.2e-11 70.5 88 40.9
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.6e-10 69.7 101 37.6
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 4.6e-10 68.2 89 47.2
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.0e-09 67.0 75 41.3
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.3e-08 62.0 99 36.4
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 9.5e-08 60.5 66 43.9
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.6e-07 59.7 66 45.5
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 1.6e-07 59.7 57 56.1
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 8.0e-07 57.4 60 43.3


User provided reference genes

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