Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.0e-56 222.2 116 100.0
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 5.9e-48 194.1 116 88.8
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 1.9e-46 189.1 116 87.9
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.0e-44 183.3 118 84.7
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.8e-33 146.0 118 72.0
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 2.3e-28 129.0 116 66.4
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.0e-12 77.0 84 54.8
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.4e-11 72.0 63 61.9
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 5.7e-11 71.2 120 44.2
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 9.8e-11 70.5 116 44.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.2e-10 69.3 118 44.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.8e-10 68.9 119 42.9
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.8e-10 68.2 116 42.2
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 4.8e-10 68.2 121 41.3
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 6.3e-10 67.8 120 43.3
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 6.3e-10 67.8 119 41.2
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 8.3e-10 67.4 116 42.2
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.1e-09 67.0 120 43.3
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.4e-09 66.6 116 41.4
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.4e-09 66.6 119 43.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.8e-09 66.2 117 43.6
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.8e-09 66.2 116 40.5
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.8e-09 66.2 117 44.4
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.4e-09 65.9 115 41.7
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.4e-09 65.9 119 45.4
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 3.1e-09 65.5 116 41.4
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 3.1e-09 65.5 87 50.6
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 3.1e-09 65.5 60 56.7
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.1e-09 65.5 115 39.1
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 4.1e-09 65.1 81 50.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 5.4e-09 64.7 115 40.9
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 5.4e-09 64.7 121 40.5
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 7.0e-09 64.3 120 42.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 9.1e-09 63.9 121 40.5
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 9.1e-09 63.9 118 39.8
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.2e-08 63.5 88 51.1
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.2e-08 63.5 115 40.9
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.2e-08 63.5 82 50.0
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.6e-08 63.2 123 40.7
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.6e-08 63.2 117 41.9
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.6e-08 63.2 113 38.9
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.7e-08 62.4 116 35.3
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 2.7e-08 62.4 83 45.8
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.5e-08 62.0 119 40.3
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 3.5e-08 62.0 92 47.8
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 3.5e-08 62.0 86 43.0
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 3.5e-08 62.0 120 43.3
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 4.5e-08 61.6 63 47.6
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 4.5e-08 61.6 120 42.5
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 5.9e-08 61.2 117 38.5
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 5.9e-08 61.2 85 43.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 5.9e-08 61.2 119 40.3
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 5.9e-08 61.2 98 44.9
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 7.7e-08 60.8 71 53.5
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.0e-07 60.5 122 38.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.0e-07 60.5 118 39.0
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.0e-07 60.5 118 39.0
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.0e-07 60.5 116 38.8
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.0e-07 60.5 85 48.2
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.3e-07 60.1 120 36.7
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 1.3e-07 60.1 87 42.5
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.7e-07 59.7 120 36.7
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.3e-07 59.3 124 37.1
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.3e-07 59.3 117 36.8
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.3e-07 59.3 92 45.7
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.9e-07 58.9 118 41.5
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.9e-07 58.9 117 38.5
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 3.8e-07 58.5 118 41.5
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 3.8e-07 58.5 118 41.5
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 3.8e-07 58.5 118 41.5
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 3.8e-07 58.5 119 38.7
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.0e-07 58.2 41 68.3
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.0e-07 58.2 41 68.3
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 6.6e-07 57.8 78 46.2
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.6e-07 57.8 64 59.4
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 6.6e-07 57.8 118 39.0
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 6.6e-07 57.8 119 40.3
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 6.6e-07 57.8 119 38.7
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 8.6e-07 57.4 119 40.3
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 8.6e-07 57.4 86 46.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.1e-06 57.0 117 36.8
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.5e-06 56.6 116 39.7
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.5e-06 56.6 115 34.8
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.5e-06 56.6 114 42.1
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.5e-06 56.6 80 40.0
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.5e-06 56.6 90 43.3
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.9e-06 56.2 120 35.8
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.9e-06 56.2 119 35.3
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 3.3e-06 55.5 115 35.7
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 3.3e-06 55.5 116 36.2
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.3e-06 55.5 120 36.7
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.3e-06 55.5 120 36.7
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.3e-06 55.5 118 38.1
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 3.3e-06 55.5 88 45.5
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 3.3e-06 55.5 63 54.0
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 4.2e-06 55.1 120 36.7
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 5.5e-06 54.7 115 32.2
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 7.2e-06 54.3 119 38.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 7.2e-06 54.3 114 37.7
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 7.2e-06 54.3 116 37.9
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 9.5e-06 53.9 115 38.3
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 9.5e-06 53.9 38 68.4
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.5e-06 53.9 119 39.5
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 9.5e-06 53.9 39 64.1


User provided reference genes

Program Settings