Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 4.6e-52 207.6 105 100.0
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 2.8e-41 171.8 116 77.6
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 2.4e-40 168.7 116 75.9
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 4.1e-40 167.9 116 75.0
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 5.3e-40 167.5 116 75.0
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 2.0e-39 165.6 117 73.5
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 3.8e-38 161.4 115 73.9
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 6.5e-38 160.6 116 71.6
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.2e-31 139.8 115 60.0
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 2.6e-31 138.7 115 59.1
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 7.7e-31 137.1 116 58.6
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.0e-30 134.4 103 63.1
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 5.0e-30 134.4 115 58.3
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.5e-30 134.0 116 58.6
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.5e-30 133.7 116 57.8
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.1e-29 133.3 116 57.8
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 5.5e-29 131.0 116 54.3
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 7.2e-29 130.6 117 56.4
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.1e-28 129.0 118 56.8
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.6e-28 128.3 116 57.8
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 4.7e-28 127.9 116 56.9
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 8.0e-28 127.1 116 54.3
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.8e-27 125.9 116 56.0
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 8.8e-27 123.6 116 56.0
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 1.5e-26 122.9 116 53.4
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 2.0e-26 122.5 103 67.0
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 2.0e-26 122.5 115 54.8
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.6e-26 122.1 115 54.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 3.3e-26 121.7 116 52.6
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 5.7e-26 120.9 116 51.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.3e-25 119.8 116 53.4
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.7e-25 119.4 116 52.6
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.7e-25 119.4 115 53.0
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 2.2e-25 119.0 116 51.7
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 2.8e-25 118.6 116 52.6
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.7e-25 118.2 116 50.9
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 3.7e-25 118.2 116 50.0
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 4.8e-25 117.9 116 50.0
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 4.8e-25 117.9 116 50.9
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 4.8e-25 117.9 116 50.9
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.8e-25 117.9 123 48.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 8.2e-25 117.1 116 51.7
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.8e-24 115.9 115 53.0
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 5.3e-24 114.4 116 48.3
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 5.3e-24 114.4 116 49.1
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 5.3e-24 114.4 115 49.6
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 7.0e-24 114.0 116 50.9
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 7.0e-24 114.0 115 52.2
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 9.1e-24 113.6 116 50.9
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 9.1e-24 113.6 116 47.4
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.2e-23 113.2 116 49.1
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 2.0e-23 112.5 116 48.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 2.7e-23 112.1 116 50.0
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.7e-23 112.1 116 48.3
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 2.7e-23 112.1 115 50.4
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 2.7e-23 112.1 115 47.8
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 2.7e-23 112.1 116 48.3
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.7e-23 112.1 115 49.6
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 3.5e-23 111.7 116 50.0
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 4.5e-23 111.3 116 49.1
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 4.5e-23 111.3 116 48.3
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 5.9e-23 110.9 116 50.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 5.9e-23 110.9 116 45.7
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 7.7e-23 110.5 116 50.9
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 7.7e-23 110.5 116 49.1
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 7.7e-23 110.5 116 49.1
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.7e-23 110.5 116 49.1
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.7e-23 110.5 116 49.1
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.7e-23 110.5 116 49.1
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 7.7e-23 110.5 116 49.1
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 7.7e-23 110.5 122 46.7
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 7.7e-23 110.5 116 50.0
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.0e-22 110.2 116 49.1
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.7e-22 109.4 115 47.0
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.7e-22 109.4 122 46.7
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 3.8e-22 108.2 116 44.8
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 6.5e-22 107.5 116 45.7
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 6.5e-22 107.5 116 45.7
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 6.5e-22 107.5 116 48.3
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 8.5e-22 107.1 116 49.1
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.1e-21 106.7 116 50.0
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.1e-21 106.7 116 47.4
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.9e-21 105.9 116 48.3
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 2.5e-21 105.5 116 44.0
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 2.5e-21 105.5 116 47.4
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.5e-21 105.5 116 44.8
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.2e-21 105.1 116 46.6
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.2e-21 105.1 116 46.6
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 7.2e-21 104.0 115 46.1
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 9.4e-21 103.6 115 47.0
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.2e-20 103.2 115 46.1
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.6e-20 102.8 116 44.8
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.1e-20 102.4 117 47.9
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.7e-20 102.1 116 46.6
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 4.7e-20 101.3 116 44.0
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.0e-19 100.1 117 44.4
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.4e-19 99.8 116 42.2
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.4e-19 99.8 116 42.2
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.4e-19 99.8 116 42.2
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.4e-19 99.8 103 47.6
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.4e-19 99.8 103 47.6
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.4e-19 99.8 115 47.8
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.8e-19 99.4 116 42.2
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.8e-19 99.4 116 42.2
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 3.0e-19 98.6 116 42.2
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 3.0e-19 98.6 115 44.3
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.2e-19 97.8 115 47.0
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.2e-19 97.8 115 47.0
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 6.8e-19 97.4 135 40.7
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 6.8e-19 97.4 115 47.0
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.8e-19 97.4 115 47.0
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.2e-18 96.7 117 44.4
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 2.0e-18 95.9 115 45.2
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.5e-18 94.0 106 44.3
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 7.5e-18 94.0 195 32.3
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 7.5e-18 94.0 117 43.6
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 9.8e-18 93.6 115 43.5
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.3e-17 93.2 88 52.3
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.3e-17 93.2 96 47.9
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 3.7e-17 91.7 117 42.7
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 8.3e-17 90.5 117 41.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.1e-16 90.1 116 42.2
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 5.4e-16 87.8 115 43.5
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 7.0e-16 87.4 123 41.5
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.9e-14 82.0 87 49.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 5.5e-13 77.8 116 40.5
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.1e-12 75.9 118 39.8
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.6e-12 75.1 123 35.8
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 8.0e-12 73.9 117 38.5
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 8.8e-11 70.5 74 52.7
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 5.7e-10 67.8 123 30.9
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.8e-09 65.5 117 35.9
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 8.3e-09 63.9 122 30.3
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 2.4e-08 62.4 97 38.1
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 5.9e-07 57.8 110 33.6
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.3e-06 56.6 118 32.2
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.9e-06 55.5 117 33.3


User provided reference genes

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