Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400019013 Solanum tuberosum HOM05D002585 ORTHO05D023007 8.0e-97 357.1 177 100.0
PGSC0003DMG402009595 Solanum tuberosum HOM05D002585 ORTHO05D023007 1.6e-44 183.3 94 94.7
Sopen01g025490 Solanum pennellii HOM05D002585 ORTHO05D023007 8.7e-43 177.6 92 93.5
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 7.3e-42 174.5 99 87.9
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.0e-39 166.4 104 77.9
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 7.1e-37 157.9 106 72.6
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.0e-35 152.5 106 75.5
Solyc01g056440.1 Solanum lycopersicum HOM05D002585 ORTHO05D023007 6.2e-33 144.8 86 81.4
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 9.9e-31 137.5 112 67.9
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 3.8e-30 135.6 99 70.7
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 4.9e-30 135.2 99 69.7
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.1e-29 134.0 106 67.0
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 1.9e-29 133.3 99 71.7
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.1e-28 129.8 112 65.2
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 3.5e-28 129.0 112 64.3
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 6.0e-28 128.3 151 53.0
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 6.7e-27 124.8 87 71.3
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 8.7e-27 124.4 87 70.1
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.1e-24 117.5 148 50.7
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 1.5e-23 113.6 87 71.3
Nitab4.5_0003945g0170 Nicotiana tabacum HOM05D002585 ORTHO05D023007 4.5e-23 112.1 76 73.7
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.8e-22 109.0 127 52.0
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 1.6e-20 103.6 149 45.0
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 1.8e-19 100.1 127 48.0
Solyc01g056410.1 Solanum lycopersicum HOM05D002585 ORTHO05D023007 2.3e-19 99.8 59 79.7
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 1.1e-18 97.4 159 42.8
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 1.1e-18 97.4 148 43.9
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 1.1e-18 97.4 149 43.0
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 1.5e-18 97.1 149 43.0
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 1.9e-18 96.7 142 40.1
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 4.3e-18 95.5 98 51.0
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 9.6e-18 94.4 153 44.4
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 1.3e-17 94.0 154 41.6
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 1.6e-17 93.6 150 41.3
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 2.8e-17 92.8 152 42.1
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 3.7e-17 92.4 152 42.1
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 3.7e-17 92.4 152 44.7
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 3.7e-17 92.4 158 40.5
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 4.8e-17 92.0 148 41.9
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 6.2e-17 91.7 149 42.3
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 6.2e-17 91.7 127 47.2
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 8.2e-17 91.3 98 50.0
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 8.2e-17 91.3 151 43.0
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 1.1e-16 90.9 148 41.9
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 1.1e-16 90.9 151 42.4
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.1e-16 90.9 98 52.0
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.1e-16 90.9 148 41.2
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.4e-16 90.5 151 42.4
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 1.4e-16 90.5 158 39.9
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 1.8e-16 90.1 148 41.9
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.8e-16 90.1 148 40.5
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 2.4e-16 89.7 149 39.6
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.4e-16 89.7 151 41.7
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 2.4e-16 89.7 151 41.1
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 3.1e-16 89.4 98 51.0
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 4.1e-16 89.0 99 49.5
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 4.1e-16 89.0 149 43.0
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 4.1e-16 89.0 151 41.7
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 4.1e-16 89.0 151 39.7
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 5.3e-16 88.6 99 50.5
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 6.9e-16 88.2 98 50.0
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 9.0e-16 87.8 144 39.6
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 1.2e-15 87.4 144 42.4
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 1.2e-15 87.4 151 40.4
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 1.5e-15 87.0 144 41.7
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 1.5e-15 87.0 116 44.0
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 1.5e-15 87.0 151 37.1
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 2.0e-15 86.7 98 46.9
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 2.6e-15 86.3 151 41.7
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 2.6e-15 86.3 146 41.8
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 2.6e-15 86.3 115 43.5
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 3.4e-15 85.9 150 41.3
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 4.5e-15 85.5 99 49.5
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 4.5e-15 85.5 149 40.9
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 5.8e-15 85.1 151 39.7
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 1.0e-14 84.3 99 50.5
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 1.0e-14 84.3 99 50.5
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 1.0e-14 84.3 99 50.5
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 1.3e-14 84.0 97 47.4
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 1.7e-14 83.6 154 41.6
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 1.7e-14 83.6 99 46.5
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 2.2e-14 83.2 98 49.0
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 2.2e-14 83.2 101 49.5
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 2.9e-14 82.8 143 39.9
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.8e-14 82.4 148 37.8
Solyc06g011320.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.8e-14 82.4 119 46.2
VMungo0720G3162 Vigna mungo HOM05D002585 ORTHO05D002917 5.0e-14 82.0 93 49.5
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 6.5e-14 81.6 97 46.4
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.5e-14 81.6 148 37.8
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 6.5e-14 81.6 152 40.1
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 8.4e-14 81.3 148 37.2
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 8.4e-14 81.3 98 41.8
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 1.1e-13 80.9 144 40.3
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 1.1e-13 80.9 99 49.5
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 1.1e-13 80.9 99 49.5
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 1.1e-13 80.9 151 37.7
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 1.1e-13 80.9 94 43.6
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 1.4e-13 80.5 158 36.7
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.4e-13 80.5 145 38.6
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 1.4e-13 80.5 150 37.3
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.4e-13 80.5 150 38.7
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 1.9e-13 80.1 149 40.9
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 1.9e-13 80.1 98 44.9
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 2.5e-13 79.7 159 39.6
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 2.5e-13 79.7 159 39.6
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 2.5e-13 79.7 159 39.6
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 2.5e-13 79.7 159 39.6
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 2.5e-13 79.7 155 36.8
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 2.5e-13 79.7 98 44.9
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.2e-13 79.3 151 39.7
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 4.2e-13 79.0 98 44.9
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 5.5e-13 78.6 150 37.3
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 9.3e-13 77.8 151 36.4
Carub.0005s1971 Capsella rubella HOM05D002585 ORTHO05D002917 9.3e-13 77.8 98 43.9
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 9.3e-13 77.8 151 35.8
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 9.3e-13 77.8 105 43.8
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 1.2e-12 77.4 159 39.0
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 1.6e-12 77.0 150 38.0
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 1.6e-12 77.0 99 44.4
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 2.1e-12 76.6 148 37.8
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 2.7e-12 76.3 150 37.3
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 2.7e-12 76.3 132 37.1
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 4.6e-12 75.5 152 35.5
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 4.6e-12 75.5 148 37.8
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 4.6e-12 75.5 158 38.0
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 6.1e-12 75.1 98 43.9
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 6.1e-12 75.1 150 36.0
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 6.1e-12 75.1 150 36.0
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 1.0e-11 74.3 148 37.2
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 1.0e-11 74.3 148 37.2
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 1.8e-11 73.6 148 36.5
Zm00001eb046790 Zea mays HOM05D002585 ORTHO05D002917 1.8e-11 73.6 98 43.9
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 2.3e-11 73.2 170 34.7
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 3.9e-11 72.4 90 44.4
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 5.1e-11 72.0 93 41.9
Dinv35818 Davidia involucrata HOM05D002585 ORTHO05D002917 1.1e-10 70.9 105 40.0
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 1.1e-10 70.9 132 36.4
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 1.9e-10 70.1 148 33.8
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 1.9e-10 70.1 147 38.1
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 2.5e-10 69.7 101 38.6
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 3.3e-10 69.3 131 35.9
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 2.2e-09 66.6 101 38.6
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 1.4e-08 63.9 151 35.8
Lalb_Chr02g0155471 Lupinus albus HOM05D002585 ORTHO05D002917 2.4e-08 63.2 100 43.0
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 4.1e-08 62.4 98 35.7
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 5.3e-08 62.0 107 40.2
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 6.9e-08 61.6 96 42.7
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 1.5e-07 60.5 101 39.6
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.6e-07 59.7 101 40.6
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 2.6e-07 59.7 105 40.0
PGSC0003DMG400044903 Solanum tuberosum HOM05D049622 ORTHO05D397584 4.5e-07 58.9 51 58.8
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 7.7e-07 58.2 101 38.6
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 1.7e-06 57.0 101 38.6
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 2.2e-06 56.6 52 53.8


User provided reference genes

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