Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018929 Solanum tuberosum HOM05D002257 ORTHO05D002417 2.0e-100 369.0 176 100.0
PGSC0003DMG400001389 Solanum tuberosum HOM05D002257 ORTHO05D002417 6.4e-46 188.0 110 83.6
Solyc07g045210.1 Solanum lycopersicum HOM05D002257 ORTHO05D002417 1.5e-39 166.8 104 79.8
Sopen07g023760 Solanum pennellii HOM05D002257 ORTHO05D002417 1.5e-39 166.8 104 79.8
PGSC0003DMG400017387 Solanum tuberosum HOM05D002257 ORTHO05D002417 1.5e-39 166.8 104 79.8
CAN.G1071.7 Capsicum annuum HOM05D002257 ORTHO05D002417 7.1e-37 157.9 104 74.0
Nitab4.5_0004941g0050 Nicotiana tabacum HOM05D002257 ORTHO05D002417 1.3e-35 153.7 105 71.4
Nitab4.5_0003086g0010 Nicotiana tabacum HOM05D002257 ORTHO05D002417 2.3e-35 152.9 104 71.2
Peaxi162Scf01164g00004 Petunia axillaris HOM05D002257 ORTHO05D002417 1.9e-34 149.8 104 68.3
Nitab4.5_0001229g0070 Nicotiana tabacum HOM05D002257 ORTHO05D002417 1.6e-33 146.7 103 68.0
Nitab4.5_0011678g0010 Nicotiana tabacum HOM05D002257 ORTHO05D002417 1.6e-33 146.7 103 68.0
Peaxi162Scf00047g00217 Petunia axillaris HOM05D002257 ORTHO05D002417 1.2e-31 140.6 103 65.0
Solyc12g006200.1 Solanum lycopersicum HOM05D002257 ORTHO05D002417 4.9e-30 135.2 103 62.1
Sopen12g002160 Solanum pennellii HOM05D002257 ORTHO05D002417 4.9e-30 135.2 103 62.1
PGSC0003DMG400028832 Solanum tuberosum HOM05D002257 ORTHO05D002417 4.9e-30 135.2 103 62.1
CAN.G294.2 Capsicum annuum HOM05D002257 ORTHO05D002417 1.1e-29 134.0 103 61.2
Nn1g00901 Nelumbo nucifera HOM05D002257 ORTHO05D002417 4.1e-29 132.1 97 60.8
Cc05_g02010 Coffea canephora HOM05D002257 ORTHO05D002417 5.4e-29 131.7 106 60.4
Dinv21320 Davidia involucrata HOM05D002257 ORTHO05D002417 7.1e-29 131.3 98 61.2
Actinidia07850 Actinidia chinensis HOM05D002257 ORTHO05D002417 1.6e-28 130.2 98 60.2
Hma1.2p1_0629F.1_g192170 Hydrangea macrophylla HOM05D002257 ORTHO05D002417 3.5e-28 129.0 98 60.2
Oeu029986.1 Olea europaea HOM05D002257 ORTHO05D002417 7.8e-28 127.9 104 58.7
ATR0751G066 Amborella trichopoda HOM05D002257 ORTHO05D002417 1.0e-27 127.5 104 57.7
Ciclev10014764m.g Citrus clementina HOM05D002257 ORTHO05D002417 1.3e-27 127.1 100 58.0
TAR629G2672 Trochodendron aralioides HOM05D002257 ORTHO05D002417 1.3e-27 127.1 96 62.5
Cpa.g.sc136.50 Carica papaya HOM05D002257 ORTHO05D002417 1.7e-27 126.7 100 60.0
PGR031G2258 Punica granatum HOM05D002257 ORTHO05D002417 6.6e-27 124.8 100 58.0
TAR627G0535 Trochodendron aralioides HOM05D002257 ORTHO05D002417 1.1e-26 124.0 96 58.3
GSVIVG01030123001 Vitis vinifera HOM05D002257 ORTHO05D002417 3.3e-26 122.5 96 58.3
vmacro12063 Vaccinium macrocarpon HOM05D002257 ORTHO05D002417 5.6e-26 121.7 100 57.0
Actinidia18827 Actinidia chinensis HOM05D002257 ORTHO05D002417 7.3e-26 121.3 94 59.6
Hma1.2p1_0599F.1_g186980 Hydrangea macrophylla HOM05D002257 ORTHO05D002417 7.3e-26 121.3 97 58.8
Rhsim06G0178700 Rhododendron simsii HOM05D002257 ORTHO05D002417 9.6e-26 120.9 100 56.0
Dinv05322 Davidia involucrata HOM05D002257 ORTHO05D002417 1.2e-25 120.6 98 58.2
Oeu000667.1 Olea europaea HOM05D002257 ORTHO05D002417 1.6e-25 120.2 104 53.8
A07p06750 Brassica napus HOM05D002257 ORTHO05D002417 3.6e-25 119.0 98 60.2
CANSAT64G2168 Cannabis sativa HOM05D002257 ORTHO05D002417 3.6e-25 119.0 102 54.9
QL04p067049 Quercus lobata HOM05D002257 ORTHO05D002417 3.6e-25 119.0 108 50.9
Carub.0007s3032 Capsella rubella HOM05D002257 ORTHO05D002417 8.1e-25 117.9 100 58.0
TWI75G1124 Tripterygium wilfordii HOM05D002257 ORTHO05D002417 8.1e-25 117.9 103 56.3
BraA07t28468Z Brassica rapa HOM05D002257 ORTHO05D002417 1.1e-24 117.5 99 58.6
AT4G12700 Arabidopsis thaliana HOM05D002257 ORTHO05D002417 1.4e-24 117.1 116 51.7
BcaB06g26773 Brassica carinata HOM05D002257 ORTHO05D002417 1.4e-24 117.1 100 59.0
Lsat_1_v5_gn_9_102580 Lactuca sativa HOM05D002257 ORTHO05D002417 1.4e-24 117.1 106 54.7
CSS0022065 Camellia sinensis var. sinensis HOM05D002257 ORTHO05D002417 2.4e-24 116.3 98 56.1
Duzib138G0785 Durio zibethinus HOM05D002257 ORTHO05D002417 2.4e-24 116.3 102 55.9
TWI36G1600 Tripterygium wilfordii HOM05D002257 ORTHO05D002417 2.4e-24 116.3 103 54.4
Eucgr.K01390 Eucalyptus grandis HOM05D002257 ORTHO05D002417 3.1e-24 115.9 102 52.0
COL.COLO4_19651 Corchorus olitorius HOM05D002257 ORTHO05D002417 4.0e-24 115.5 102 54.9
THA.LOC104815369 Tarenaya hassleriana HOM05D002257 ORTHO05D002417 4.0e-24 115.5 100 56.0
CiPaw.03G283600 Carya illinoinensis HOM05D002257 ORTHO05D002417 6.9e-24 114.8 106 51.9
AL9U12210 Arabidopsis lyrata HOM05D002257 ORTHO05D002417 9.0e-24 114.4 100 54.0
BcaC06g35861 Brassica carinata HOM05D002257 ORTHO05D002417 9.0e-24 114.4 102 54.9
C07p10330 Brassica napus HOM05D002257 ORTHO05D002417 9.0e-24 114.4 102 54.9
BolC7t41482H Brassica oleracea HOM05D002257 ORTHO05D002417 9.0e-24 114.4 102 54.9
THA.LOC104808835 Tarenaya hassleriana HOM05D002257 ORTHO05D002417 1.2e-23 114.0 100 54.0
Sp3g23160 Schrenkiella parvula HOM05D002257 ORTHO05D002417 1.5e-23 113.6 102 54.9
Sc06g0009950 Simmondsia chinensis HOM05D002257 ORTHO05D002417 1.5e-23 113.6 98 57.1
Thecc.01G199200 Theobroma cacao HOM05D002257 ORTHO05D002417 1.5e-23 113.6 102 54.9
Cfa014204 Carpinus fangiana HOM05D002257 ORTHO05D002417 2.0e-23 113.2 108 50.0
Gorai.001G099500 Gossypium raimondii HOM05D002257 ORTHO05D002417 2.0e-23 113.2 102 54.9
DCAR_019668 Daucus carota HOM05D002257 ORTHO05D002417 3.4e-23 112.5 106 57.5
Haze_12590 Corylus avellana HOM05D002257 ORTHO05D002417 4.4e-23 112.1 108 50.0
MELO3C013455.2 Cucumis melo HOM05D002257 ORTHO05D002417 4.4e-23 112.1 108 47.2
Duzib133G0522 Durio zibethinus HOM05D002257 ORTHO05D002417 4.4e-23 112.1 102 54.9
ECA240G3767 Erigeron canadensis HOM05D002257 ORTHO05D002417 4.4e-23 112.1 106 53.8
Prupe.3G195000 Prunus persica HOM05D002257 ORTHO05D002417 4.4e-23 112.1 104 53.8
Thhalv10002463m.g Eutrema salsugineum HOM05D002257 ORTHO05D002417 5.8e-23 111.7 102 53.9
Manes.12G064400 Manihot esculenta HOM05D002257 ORTHO05D002417 5.8e-23 111.7 100 52.0
Aa31LG8G14440 Aethionema arabicum HOM05D002257 ORTHO05D002417 7.6e-23 111.3 98 54.1
ClCG00G001400 Citrullus lanatus HOM05D002257 ORTHO05D002417 9.9e-23 110.9 108 48.1
ClCG02G010890 Citrullus lanatus HOM05D002257 ORTHO05D002417 9.9e-23 110.9 108 48.1
Gohir.D07G170400 Gossypium hirsutum HOM05D002257 ORTHO05D002417 9.9e-23 110.9 102 52.9
SalBow7G4720 Salvia bowleyana HOM05D002257 ORTHO05D002417 9.9e-23 110.9 105 53.3
EL10Ac3g06073 Beta vulgaris HOM05D002257 ORTHO05D002417 1.3e-22 110.5 100 52.0
Carub.0003s2600 Capsella rubella HOM05D002257 ORTHO05D002417 1.3e-22 110.5 105 53.3
AUR62023803 Chenopodium quinoa HOM05D002257 ORTHO05D002417 1.3e-22 110.5 100 51.0
Gohir.D07G092900 Gossypium hirsutum HOM05D002257 ORTHO05D002417 1.3e-22 110.5 102 53.9
Sed0001523 Sechium edule HOM05D002257 ORTHO05D002417 1.3e-22 110.5 108 48.1
CsaV3_6G009730 Cucumis sativus L. HOM05D002257 ORTHO05D002417 1.7e-22 110.2 108 46.3
Gorai.001G190400 Gossypium raimondii HOM05D002257 ORTHO05D002417 1.7e-22 110.2 102 52.9
MD17G1105300 Malus domestica HOM05D002257 ORTHO05D002417 1.7e-22 110.2 103 53.4
Sabra14G0129700 Salix brachista HOM05D002257 ORTHO05D002417 1.7e-22 110.2 103 52.4
Ah.16g107490 Amaranthus hybridus HOM05D002257 ORTHO05D002417 2.2e-22 109.8 100 52.0
MSTRG.6618 Avicennia marina HOM05D002257 ORTHO05D002417 2.2e-22 109.8 106 52.8
VMungo0647G0365 Vigna mungo HOM05D002257 ORTHO05D002417 2.2e-22 109.8 104 52.9
Atru.chr6.3428 Acer truncatum HOM05D002257 ORTHO05D002417 2.9e-22 109.4 99 53.5
CARHR102120 Cardamine hirsuta HOM05D002257 ORTHO05D002417 2.9e-22 109.4 104 53.8
MBI13_g05165_MAGBIO Magnolia biondii HOM05D002257 ORTHO05D002417 2.9e-22 109.4 97 53.6
Psat2g060800 Pisum sativum HOM05D002257 ORTHO05D002417 2.9e-22 109.4 102 53.9
AUR62002384 Chenopodium quinoa HOM05D002257 ORTHO05D002417 3.8e-22 109.0 100 50.0
Migut.M00068 Erythranthe guttata HOM05D002257 ORTHO05D002417 3.8e-22 109.0 107 51.4
LjContig00155g0018256 Lotus japonicus HOM05D002257 ORTHO05D002417 3.8e-22 109.0 104 51.9
SGA_v2.0_scaffold181G39703 Striga asiatica HOM05D002257 ORTHO05D002417 3.8e-22 109.0 107 50.5
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 3.8e-22 109.0 106 52.8
MSTRG.14905 Avicennia marina HOM05D002257 ORTHO05D002417 4.9e-22 108.6 113 49.6
CARHR217960 Cardamine hirsuta HOM05D002257 ORTHO05D002417 4.9e-22 108.6 100 53.0
Glyma.02G223300 Glycine max HOM05D002257 ORTHO05D002417 4.9e-22 108.6 108 50.9
PSO675G2012 Papaver somniferum HOM05D002257 ORTHO05D002417 4.9e-22 108.6 99 50.5
Phvul.008G189900 Phaseolus vulgaris HOM05D002257 ORTHO05D002417 4.9e-22 108.6 104 52.9
AL3G41980 Arabidopsis lyrata HOM05D002257 ORTHO05D002417 6.4e-22 108.2 105 51.4
Ca_05556_v3 Cicer arietinum L. HOM05D002257 ORTHO05D002417 8.4e-22 107.8 103 51.5
AT2G04280 Arabidopsis thaliana HOM05D002257 ORTHO05D002417 1.1e-21 107.5 139 43.2
Manes.13G060100 Manihot esculenta HOM05D002257 ORTHO05D002417 1.1e-21 107.5 104 51.0
MD09G1130100 Malus domestica HOM05D002257 ORTHO05D002417 1.4e-21 107.1 103 50.5
Glyma.14G190100 Glycine max HOM05D002257 ORTHO05D002417 2.4e-21 106.3 108 51.9
Gohir.A07G088000 Gossypium hirsutum HOM05D002257 ORTHO05D002417 3.2e-21 105.9 102 52.9
TPR.G13835 Trifolium pratense HOM05D002257 ORTHO05D002417 4.2e-21 105.5 103 49.5
Potri.014G170200 Populus trichocarpa HOM05D002257 ORTHO05D002417 7.1e-21 104.8 109 48.6
DCAR_021084 Daucus carota HOM05D002257 ORTHO05D002417 9.3e-21 104.4 107 51.4
Lalb_Chr10g0103141 Lupinus albus HOM05D002257 ORTHO05D002417 1.2e-20 104.0 100 50.0
MSTRG.14101 Avicennia marina HOM05D002257 ORTHO05D002417 2.7e-20 102.8 102 50.0
Rhsim04G0031000 Rhododendron simsii HOM05D002257 ORTHO05D002417 2.7e-20 102.8 159 39.0
Migut.H01276 Erythranthe guttata HOM05D002257 ORTHO05D002417 6.0e-20 101.7 99 52.5
Lalb_Chr04g0252461 Lupinus albus HOM05D002257 ORTHO05D002417 6.0e-20 101.7 100 50.0
FAN05G3875 Fragaria x ananassa HOM05D002257 ORTHO05D002417 7.8e-20 101.3 104 50.0
Medtr5g069410 Medicago truncatula HOM05D002257 ORTHO05D002417 1.0e-19 100.9 100 49.0
DCAR_008748 Daucus carota HOM05D002257 ORTHO05D002417 1.3e-19 100.5 105 46.7
FAN09G2326 Fragaria x ananassa HOM05D002257 ORTHO05D002417 3.9e-19 99.0 109 48.6
FAN09G3321 Fragaria x ananassa HOM05D002257 ORTHO05D002417 3.9e-19 99.0 109 48.6
SHI37431 Sapria himalayana HOM05D002257 ORTHO05D002417 5.1e-19 98.6 93 45.2
vmacro09469 Vaccinium macrocarpon HOM05D002257 ORTHO05D002417 5.1e-19 98.6 101 47.5
FvH4_6g40420 Fragaria vesca HOM05D002257 ORTHO05D002417 6.6e-19 98.2 105 48.6
FAN02G4471 Fragaria x ananassa HOM05D002257 ORTHO05D002417 6.6e-19 98.2 105 48.6
RcHm_v2.0_Chr2g0155651 Rosa chinensis HOM05D002257 ORTHO05D002417 8.7e-19 97.8 107 46.7
Sed0000038 Sechium edule HOM05D002257 ORTHO05D002417 8.7e-19 97.8 108 45.4
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.8e-17 92.8 89 48.3
CDE01G0445 Ceratophyllum demersum HOM05D002257 ORTHO05D002417 3.6e-17 92.4 90 50.0
Aqoxy1G00424 Aquilegia oxysepala HOM05D002257 ORTHO05D002417 8.1e-17 91.3 104 45.2
HanXRQChr03g0074961 Helianthus annuus HOM05D002257 ORTHO05D002417 2.0e-15 86.7 94 47.9
HPP92_020825 Vanilla planifolia HOM05D002257 ORTHO05D002417 2.9e-14 82.8 107 41.1
Gohir.A07G193066 Gossypium hirsutum HOM05D002257 ORTHO05D002417 1.1e-13 80.9 102 41.2
Gorai.001G223300 Gossypium raimondii HOM05D002257 ORTHO05D002417 3.2e-13 79.3 102 41.2
Gohir.D07G199401 Gossypium hirsutum HOM05D002257 ORTHO05D002417 9.3e-13 77.8 102 39.2
TPR.G20833 Trifolium pratense HOM05D002257 ORTHO05D002417 6.0e-12 75.1 57 57.9
Oeu012350.2 Olea europaea HOM05D002257 ORTHO05D002417 1.1e-10 70.9 95 41.1
Rhsim04G0030900 Rhododendron simsii HOM05D002257 ORTHO05D002417 8.1e-09 64.7 57 52.6
PGSC0003DMG400043131 Solanum tuberosum HOM05D002257 ORTHO05D398528 6.9e-08 61.6 37 70.3
Sc21g0000430 Simmondsia chinensis HOM05D002257 ORTHO05D002417 1.5e-07 60.5 83 43.4
Os10g0456400 Oryza sativa ssp. japonica HOM05D002257 ORTHO05D002417 3.4e-07 59.3 132 35.6
MBI04_g09723_MAGBIO Magnolia biondii HOM05D002257 ORTHO05D002417 1.3e-06 57.4 101 31.7


User provided reference genes

Program Settings