Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.1e-155 552.4 285 100.0
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.9e-108 396.4 205 98.0
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 1.9e-108 396.4 205 98.0
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 2.3e-106 389.4 205 97.1
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 3.0e-106 389.0 201 98.0
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 1.1e-103 380.6 227 88.1
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 1.1e-103 380.6 227 88.1
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-93 347.1 204 88.7
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 1.4e-90 337.0 243 77.0
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 5.1e-85 318.5 215 81.4
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-82 310.8 204 80.4
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 8.9e-82 307.8 156 99.4
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 5.8e-73 278.5 209 74.2
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 1.1e-71 274.2 193 77.7
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 3.5e-70 269.2 171 81.9
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 1.0e-69 267.7 202 72.8
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 1.4e-66 257.3 207 70.5
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.8e-65 251.9 163 81.6
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 5.1e-61 238.8 201 68.7
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.9e-60 236.9 122 95.9
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 2.1e-59 233.4 140 87.1
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 2.8e-59 233.0 140 87.9
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.1e-58 231.1 140 87.1
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.1e-58 231.1 140 87.1
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.1e-58 231.1 140 87.1
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.6e-57 226.5 175 71.4
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 4.5e-57 225.7 140 85.0
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 5.8e-57 225.3 153 79.7
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.9e-56 222.2 140 85.0
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 6.2e-51 205.3 122 84.4
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 3.1e-50 203.0 122 83.6
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.6e-49 199.9 148 73.0
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 2.2e-48 196.8 189 63.0
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 3.5e-46 189.5 114 87.7
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.4e-42 177.6 182 59.3
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 2.4e-42 176.8 105 87.6
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 1.5e-41 174.1 106 85.8
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 1.7e-40 170.6 148 64.9
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 3.2e-39 166.4 83 100.0
arahy.Tifrunner.gnm1.ann1.J9XL5M Arachis hypogaea HOM05D000963 ORTHO05D005131 1.0e-37 161.4 83 97.6
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.0e-36 157.1 150 62.7
MBI08_g48228_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 2.5e-36 156.8 78 100.0
HPP92_028387 Vanilla planifolia HOM05D000963 ORTHO05D005131 5.7e-36 155.6 84 92.9
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 2.8e-35 153.3 138 65.2
arahy.Tifrunner.gnm1.ann1.LWFR1C Arachis hypogaea HOM05D000963 ORTHO05D005131 8.2e-35 151.8 78 97.4
SHI36890 Sapria himalayana HOM05D000963 ORTHO05D005131 6.9e-34 148.7 74 98.6
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 9.1e-34 148.3 73 100.0
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 9.1e-34 148.3 73 100.0
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.2e-33 147.9 114 74.6
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 1.2e-33 147.9 91 85.7
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 1.2e-33 147.9 91 85.7
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.5e-33 146.0 81 90.1
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 7.7e-33 145.2 94 80.9
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 2.2e-32 143.7 114 72.8
Lsat_1_v5_gn_9_35301 Lactuca sativa HOM05D000963 ORTHO05D005131 4.2e-31 139.4 78 85.9
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.1e-30 137.1 102 74.5
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.7e-30 136.7 73 93.2
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 3.6e-30 136.3 73 93.2
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.4e-29 134.4 93 77.4
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.8e-29 134.0 124 64.5
arahy.Tifrunner.gnm1.ann1.UXAL1K Arachis hypogaea HOM05D000963 ORTHO05D011117 3.9e-29 132.9 67 97.0
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 3.9e-29 132.9 73 91.8
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.1e-29 132.5 85 80.0
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.1e-28 131.3 85 82.4
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.3e-28 129.8 126 61.9
Hma1.2p1_0045F.1_g026530 Hydrangea macrophylla HOM05D000963 ORTHO05D005131 5.7e-28 129.0 84 79.8
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 7.4e-28 128.6 60 100.0
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 9.7e-28 128.3 91 74.7
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 1.3e-27 127.9 97 72.2
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 1.3e-27 127.9 97 72.2
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 1.3e-27 127.9 97 72.2
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 1.3e-27 127.9 97 72.2
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 1.3e-27 127.9 97 72.2
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 1.3e-27 127.9 97 72.2
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-26 124.4 73 84.9
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 3.1e-26 123.2 73 83.6
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.6e-25 120.2 116 62.9
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 4.5e-25 119.4 143 53.1
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 6.5e-24 115.5 73 83.6
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 2.5e-23 113.6 66 84.8
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 4.2e-23 112.8 77 74.0
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 4.2e-23 112.8 94 64.9
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.1e-22 110.5 66 81.8
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 3.6e-22 109.8 112 58.0
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 6.7e-21 105.5 74 74.3
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 8.8e-21 105.1 56 91.1
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.1e-20 104.8 54 92.6
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 1.7e-19 100.9 52 90.4
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.8e-19 99.4 62 82.3
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 8.2e-19 98.6 49 93.9
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 1.1e-18 98.2 53 84.9
Migut.D01497 Erythranthe guttata HOM05D000963 ORTHO05D005131 9.1e-18 95.1 113 56.6
arahy.Tifrunner.gnm1.ann1.JE53Y0 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.2e-17 94.7 48 95.8
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 5.9e-17 92.4 99 59.6
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 7.7e-17 92.0 68 69.1
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-16 91.3 49 85.7
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 3.8e-16 89.7 122 49.2
Nitab4.5_0008665g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 6.5e-16 89.0 71 66.2
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 6.5e-16 89.0 233 35.6
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 8.5e-16 88.6 135 47.4
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.5e-15 87.0 57 71.9
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 4.2e-15 86.3 151 43.7
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 9.4e-15 85.1 54 75.9
arahy.Tifrunner.gnm1.ann1.D10MHU Arachis hypogaea HOM05D000963 ORTHO05D005131 8.0e-14 82.0 44 93.2
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 5.2e-13 79.3 78 61.5
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.2e-12 78.2 53 67.9
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.5e-12 77.8 52 71.2
arahy.Tifrunner.gnm1.ann1.SH46T5 Arachis hypogaea HOM05D000963 ORTHO05D005131 3.4e-12 76.6 41 92.7
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.4e-12 76.3 52 69.2
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 4.4e-12 76.3 37 97.3
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 5.7e-12 75.9 106 50.0
Sopen10g016560 Solanum pennellii HOM05D000963 ORTHO05D005131 2.2e-11 73.9 38 89.5
Medtr7g093213 Medicago truncatula HOM05D000963 ORTHO05D005131 4.8e-11 72.8 41 87.8
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 6.3e-11 72.4 53 62.3
Oeu012823.1 Olea europaea HOM05D000963 ORTHO05D005131 3.1e-10 70.1 68 61.8
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 4.1e-10 69.7 48 72.9
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 4.1e-10 69.7 48 72.9
BolSC46t60969H Brassica oleracea HOM05D000963 ORTHO05D005131 9.1e-10 68.6 36 94.4
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.6e-09 67.8 41 85.4
TPR.G33662 Trifolium pratense HOM05D004957 ORTHO05D006741 1.6e-09 67.8 35 88.6
CsaV3_UNG209450 Cucumis sativus L. HOM05D010604 ORTHO05D012476 2.7e-09 67.0 48 70.8
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 2.7e-09 67.0 48 70.8
Lsat_1_v5_gn_5_152921 Lactuca sativa HOM05D010604 ORTHO05D012476 2.7e-09 67.0 48 70.8
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 2.7e-09 67.0 48 70.8
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 3.5e-09 66.6 33 90.9
ECA234G4679 Erigeron canadensis HOM05D000476 ORTHO05D004793 1.7e-08 64.3 37 83.8
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 6.5e-08 62.4 72 45.8
Sopen09g020260 Solanum pennellii HOM05D010604 ORTHO05D012476 6.5e-08 62.4 49 63.3
Nitab4.5_0004533g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 8.5e-08 62.0 40 77.5
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 8.5e-08 62.0 30 93.3
BraA07t28395Z Brassica rapa HOM05D000963 ORTHO05D005131 1.1e-07 61.6 41 75.6
Oeu029253.1 Olea europaea HOM05D000963 ORTHO05D005131 3.2e-07 60.1 124 36.3
SEGI_14910 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 1.2e-06 58.2 78 47.4


User provided reference genes

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