Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018887 Solanum tuberosum HOM05D002242 ORTHO05D002275 8.9e-95 350.5 212 100.0
Solyc10g009380.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 6.5e-69 264.6 208 66.8
Sopen10g005160 Solanum pennellii HOM05D002242 ORTHO05D002275 1.5e-62 243.4 189 67.2
Peaxi162Scf00087g02228 Petunia axillaris HOM05D002242 ORTHO05D002275 2.7e-22 109.8 239 37.2
Nitab4.5_0003046g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 5.5e-20 102.1 183 40.4
Nitab4.5_0004497g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 9.4e-20 101.3 124 55.6
CAN.G1415.21 Capsicum annuum HOM05D002242 ORTHO05D002275 3.4e-17 92.8 238 34.0
Dinv34219 Davidia involucrata HOM05D002242 ORTHO05D002275 1.1e-15 87.8 246 32.5
QL08p045696 Quercus lobata HOM05D002242 ORTHO05D002275 1.4e-15 87.4 248 32.3
Peaxi162Scf00345g00124 Petunia axillaris HOM05D002242 ORTHO05D002275 3.1e-15 86.3 246 31.7
Oeu004983.1 Olea europaea HOM05D002242 ORTHO05D002275 9.2e-15 84.7 225 31.6
Oeu043226.1 Olea europaea HOM05D002242 ORTHO05D002275 9.2e-15 84.7 205 34.1
Cc02_g39550 Coffea canephora HOM05D002242 ORTHO05D002275 2.7e-14 83.2 247 31.6
HanXRQChr16g0524311 Helianthus annuus HOM05D002242 ORTHO05D002275 2.7e-14 83.2 221 30.8
Nitab4.5_0010712g0010 Nicotiana tabacum HOM05D002242 ORTHO05D002275 2.7e-14 83.2 241 32.4
Manes.01G244900 Manihot esculenta HOM05D002242 ORTHO05D002275 7.7e-14 81.6 236 28.0
FAN10G3865 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.3e-13 80.1 233 31.8
FAN10G2930 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.9e-13 79.7 233 31.8
Sopen01g039800 Solanum pennellii HOM05D002242 ORTHO05D002275 3.8e-13 79.3 237 32.9
Solyc01g096080.3 Solanum lycopersicum HOM05D002242 ORTHO05D002275 6.6e-13 78.6 237 32.5
FAN01G2189 Fragaria x ananassa HOM05D002242 ORTHO05D002275 8.6e-13 78.2 213 31.9
Gohir.A11G097800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 8.6e-13 78.2 238 29.4
TAR636G3588 Trochodendron aralioides HOM05D002242 ORTHO05D002275 8.6e-13 78.2 196 30.6
Manes.05G021600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.5e-12 77.4 237 28.7
Thecc.01G340500 Theobroma cacao HOM05D002242 ORTHO05D002275 1.5e-12 77.4 244 29.9
Duzib138G1576 Durio zibethinus HOM05D002242 ORTHO05D002275 2.5e-12 76.6 215 28.8
FvH4_7g16850 Fragaria vesca HOM05D002242 ORTHO05D002275 2.5e-12 76.6 232 31.0
Gohir.A07G136800 Gossypium hirsutum HOM05D002242 ORTHO05D002275 3.3e-12 76.3 236 28.0
Oeu007879.1 Olea europaea HOM05D002242 ORTHO05D002275 3.3e-12 76.3 219 34.2
Oeu004958.1 Olea europaea HOM05D002242 ORTHO05D002275 4.3e-12 75.9 214 31.3
Actinidia20250 Actinidia chinensis HOM05D002242 ORTHO05D002275 7.3e-12 75.1 240 30.8
Prupe.2G190500 Prunus persica HOM05D002242 ORTHO05D002275 7.3e-12 75.1 242 28.1
Haze_15674 Corylus avellana HOM05D002242 ORTHO05D002275 1.2e-11 74.3 229 30.1
HanXRQChr17g0563391 Helianthus annuus HOM05D002242 ORTHO05D002275 1.2e-11 74.3 215 39.5
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.6e-11 73.9 250 28.4
Lj3g0010764 Lotus japonicus HOM05D002242 ORTHO05D002275 1.6e-11 73.9 233 31.8
Gohir.D11G102500 Gossypium hirsutum HOM05D002242 ORTHO05D002275 2.1e-11 73.6 235 27.7
Nitab4.5_0001763g0050 Nicotiana tabacum HOM05D002242 ORTHO05D002275 2.1e-11 73.6 256 29.3
Sabra02G0140300 Salix brachista HOM05D002242 ORTHO05D002275 2.1e-11 73.6 239 28.0
Sabra14G0073600 Salix brachista HOM05D002242 ORTHO05D002275 2.1e-11 73.6 245 29.8
GSVIVG01027167001 Vitis vinifera HOM05D002242 ORTHO05D002275 2.8e-11 73.2 207 29.0
FAN03G2616 Fragaria x ananassa HOM05D002242 ORTHO05D002275 3.6e-11 72.8 223 30.5
Dinv32603 Davidia involucrata HOM05D002242 ORTHO05D002275 4.7e-11 72.4 253 30.4
Gohir.D07G142066 Gossypium hirsutum HOM05D002242 ORTHO05D002275 6.1e-11 72.0 238 27.7
CiPaw.01G077500 Carya illinoinensis HOM05D002242 ORTHO05D002275 8.0e-11 71.6 243 29.6
Ca_12786_v3 Cicer arietinum L. HOM05D002242 ORTHO05D002275 1.0e-10 71.2 175 29.1
TAR425G0001 Trochodendron aralioides HOM05D002242 ORTHO05D002275 1.0e-10 71.2 196 29.6
Gorai.008G126300 Gossypium raimondii HOM05D002242 ORTHO05D002275 1.4e-10 70.9 212 29.2
Sabra15G0009600 Salix brachista HOM05D002242 ORTHO05D002275 1.4e-10 70.9 206 31.6
Gohir.D12G116600 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.8e-10 70.5 212 28.3
FAN06G0152 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.3e-10 70.1 238 30.3
FAN06G1161 Fragaria x ananassa HOM05D002242 ORTHO05D002275 2.3e-10 70.1 238 30.3
Actinidia07972 Actinidia chinensis HOM05D002242 ORTHO05D002275 4.0e-10 69.3 243 29.2
CSS0021112 Camellia sinensis var. sinensis HOM05D002242 ORTHO05D002275 4.0e-10 69.3 230 29.1
CANSAT56G1040 Cannabis sativa HOM05D002242 ORTHO05D002275 4.0e-10 69.3 230 28.7
Potri.002G172900 Populus trichocarpa HOM05D002242 ORTHO05D002275 5.2e-10 68.9 238 26.9
Atru.chr5.685 Acer truncatum HOM05D002242 ORTHO05D002275 8.9e-10 68.2 258 27.1
Gorai.007G109600 Gossypium raimondii HOM05D002242 ORTHO05D002275 8.9e-10 68.2 202 28.2
AUR62004507 Chenopodium quinoa HOM05D002242 ORTHO05D002275 1.2e-09 67.8 96 46.9
Glyma.07G054700 Glycine max HOM05D002242 ORTHO05D002275 1.2e-09 67.8 235 30.2
Gohir.A12G113100 Gossypium hirsutum HOM05D002242 ORTHO05D002275 1.2e-09 67.8 212 29.2
Lsat_1_v5_gn_4_33660 Lactuca sativa HOM05D002242 ORTHO05D002275 1.2e-09 67.8 225 27.6
Psat3g001920 Pisum sativum HOM05D002242 ORTHO05D002275 1.2e-09 67.8 225 28.4
Potri.015G011900 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.2e-09 67.8 205 30.7
Medtr8g027435 Medicago truncatula HOM05D002242 ORTHO05D002275 1.5e-09 67.4 126 38.1
Peaxi162Scf00716g00032 Petunia axillaris HOM05D000078 ORTHO05D000025 1.5e-09 67.4 87 46.0
Potri.014G100200 Populus trichocarpa HOM05D002242 ORTHO05D002275 1.5e-09 67.4 253 28.1
Actinidia28112 Actinidia chinensis HOM05D002242 ORTHO05D002275 2.0e-09 67.0 125 38.4
Glyma.16G023500 Glycine max HOM05D002242 ORTHO05D002275 2.6e-09 66.6 237 30.8
DCAR_005401 Daucus carota HOM05D002242 ORTHO05D002275 3.4e-09 66.2 239 28.0
Phvul.009G051700 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 3.4e-09 66.2 202 29.2
SalBow5G1307 Salvia bowleyana HOM05D002242 ORTHO05D002275 3.4e-09 66.2 201 27.4
MSTRG.28269 Avicennia marina HOM05D002242 ORTHO05D002275 4.4e-09 65.9 235 27.2
Dinv37328 Davidia involucrata HOM05D002242 ORTHO05D002275 5.7e-09 65.5 97 44.3
Medtr1g007905 Medicago truncatula HOM05D002242 ORTHO05D002275 9.8e-09 64.7 193 29.5
Migut.O00897 Erythranthe guttata HOM05D002242 ORTHO05D002275 1.3e-08 64.3 237 27.4
Manes.01G184600 Manihot esculenta HOM05D002242 ORTHO05D002275 1.3e-08 64.3 78 42.3
PGSC0003DMG400007035 Solanum tuberosum HOM05D002242 ORTHO05D002275 1.3e-08 64.3 205 29.3
ECA234G4607 Erigeron canadensis HOM05D002242 ORTHO05D002275 1.7e-08 63.9 61 54.1
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 1.7e-08 63.9 93 41.9
TWI59G0079 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 1.7e-08 63.9 242 28.9
Lalb_Chr10g0100621 Lupinus albus HOM05D002242 ORTHO05D002275 2.2e-08 63.5 216 28.2
Lalb_Chr17g0342761 Lupinus albus HOM05D002242 ORTHO05D002275 2.2e-08 63.5 201 27.9
Cpa.g.sc96.41 Carica papaya HOM05D002242 ORTHO05D002275 2.9e-08 63.2 96 43.8
Glyma.19G257000 Glycine max HOM05D002242 ORTHO05D002275 2.9e-08 63.2 205 29.8
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea HOM05D002242 ORTHO05D002275 3.7e-08 62.8 239 26.4
Solyc05g050550.4 Solanum lycopersicum HOM05D002242 ORTHO05D002275 3.7e-08 62.8 175 26.9
Gorai.001G153800 Gossypium raimondii HOM05D002242 ORTHO05D002275 4.9e-08 62.4 134 33.6
Ah.05g179410 Amaranthus hybridus HOM05D002242 ORTHO05D002275 6.4e-08 62.0 89 48.3
Migut.N01536 Erythranthe guttata HOM05D002242 ORTHO05D002275 6.4e-08 62.0 96 46.9
Lsat_1_v5_gn_6_85600 Lactuca sativa HOM05D002242 ORTHO05D002275 6.4e-08 62.0 65 50.8
vmacro13169 Vaccinium macrocarpon HOM05D002242 ORTHO05D002275 6.4e-08 62.0 79 45.6
PGSC0003DMG400000119 Solanum tuberosum HOM05D002242 ORTHO05D002275 8.3e-08 61.6 225 29.3
Duzib084G0563 Durio zibethinus HOM05D002242 ORTHO05D002275 1.1e-07 61.2 224 28.6
Psat6g034840 Pisum sativum HOM05D002242 ORTHO05D002275 1.1e-07 61.2 183 29.5
RcHm_v2.0_Chr1g0360071 Rosa chinensis HOM05D002242 ORTHO05D002275 1.1e-07 61.2 229 29.3
Hund27189 Selenicereus undatus HOM05D002242 ORTHO05D002275 1.1e-07 61.2 237 27.8
Medtr3g091680 Medicago truncatula HOM05D002242 ORTHO05D002275 2.4e-07 60.1 170 27.1
CARHR141870 Cardamine hirsuta HOM05D010353 ORTHO05D011141 3.2e-07 59.7 217 27.6
MD07G1152200 Malus domestica HOM05D002242 ORTHO05D002275 3.2e-07 59.7 226 26.5
MD01G1083500 Malus domestica HOM05D002242 ORTHO05D002275 4.1e-07 59.3 233 27.0
Manes.02G144300 Manihot esculenta HOM05D002242 ORTHO05D002275 4.1e-07 59.3 191 27.7
Ah.13g070390 Amaranthus hybridus HOM05D002242 ORTHO05D002275 5.4e-07 58.9 87 37.9
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 5.4e-07 58.9 85 48.2
Cfa016239 Carpinus fangiana HOM05D002242 ORTHO05D002275 9.2e-07 58.2 216 29.6
Haze_00202 Corylus avellana HOM05D002242 ORTHO05D002275 9.2e-07 58.2 230 28.3
Glyma.03G258400 Glycine max HOM05D002242 ORTHO05D002275 9.2e-07 58.2 216 28.7
QL09p008666 Quercus lobata HOM05D002242 ORTHO05D002275 9.2e-07 58.2 223 28.3
arahy.Tifrunner.gnm1.ann1.NAPQ43 Arachis hypogaea HOM05D002242 ORTHO05D002275 1.2e-06 57.8 211 29.9
arahy.Tifrunner.gnm1.ann1.S82JHH Arachis hypogaea HOM05D002242 ORTHO05D002275 1.2e-06 57.8 211 29.9
Phvul.006G114400 Phaseolus vulgaris HOM05D002242 ORTHO05D002275 1.6e-06 57.4 84 42.9
Psat4g214600 Pisum sativum HOM05D002242 ORTHO05D002275 1.6e-06 57.4 120 37.5
SGA_v2.0_scaffold232G43549 Striga asiatica HOM05D002242 ORTHO05D002275 1.6e-06 57.4 96 45.8
Thecc.03G200400 Theobroma cacao HOM05D002242 ORTHO05D002275 1.6e-06 57.4 116 36.2
Rhsim01G0174300 Rhododendron simsii HOM05D002242 ORTHO05D002275 2.0e-06 57.0 263 24.7
Sopen05g028980 Solanum pennellii HOM05D002242 ORTHO05D002275 2.0e-06 57.0 171 27.5
TPR.G20223 Trifolium pratense HOM05D002242 ORTHO05D002275 2.0e-06 57.0 217 29.0
TWI23G0291 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 2.0e-06 57.0 244 26.2
DCAR_025263 Daucus carota HOM05D002242 ORTHO05D002275 2.7e-06 56.6 254 26.8
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.7e-06 56.6 62 48.4
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla HOM05D002242 ORTHO05D002275 2.7e-06 56.6 62 48.4
TWI14G0218 Tripterygium wilfordii HOM05D002242 ORTHO05D002275 2.7e-06 56.6 109 42.2
arahy.Tifrunner.gnm1.ann1.EWV5Y4 Arachis hypogaea HOM05D002242 ORTHO05D002275 3.5e-06 56.2 95 38.9
CiPaw.06G045500 Carya illinoinensis HOM05D002242 ORTHO05D002275 3.5e-06 56.2 222 25.2
ClCG06G002630 Citrullus lanatus HOM05D002242 ORTHO05D002275 3.5e-06 56.2 213 26.8
Duzib205G1627 Durio zibethinus HOM05D002242 ORTHO05D002275 3.5e-06 56.2 193 28.5
TPR.G18779 Trifolium pratense HOM05D002242 ORTHO05D002275 3.5e-06 56.2 163 25.8
VMungo0647G2336 Vigna mungo HOM05D002242 ORTHO05D002275 3.5e-06 56.2 173 28.3
ClCG05G000740 Citrullus lanatus HOM05D002242 ORTHO05D002275 5.9e-06 55.5 183 29.5
Sc01g0002560 Simmondsia chinensis HOM05D002242 ORTHO05D002275 5.9e-06 55.5 233 27.9
Aqoxy4G02751 Aquilegia oxysepala HOM05D002242 ORTHO05D002275 7.8e-06 55.1 95 40.0
MELO3C006014.2 Cucumis melo HOM05D002242 ORTHO05D002275 7.8e-06 55.1 188 27.7
Nn1g00284 Nelumbo nucifera HOM05D002242 ORTHO05D002275 7.8e-06 55.1 186 26.3
PGR142G4389 Punica granatum HOM05D002242 ORTHO05D002275 7.8e-06 55.1 235 24.3
THA.LOC104817373 Tarenaya hassleriana HOM05D010353 ORTHO05D011141 7.8e-06 55.1 206 25.7


User provided reference genes

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