Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 8.5e-205 716.8 379 100.0
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 3.7e-200 701.4 379 98.4
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 2.5e-196 688.7 380 96.1
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 3.0e-186 655.2 379 91.6
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 1.7e-181 639.4 379 90.8
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 2.9e-181 638.6 379 87.3
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 4.5e-174 614.8 331 99.1
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 2.7e-158 562.4 380 75.5
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 3.5e-158 562.0 381 75.3
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 6.0e-158 561.2 379 75.5
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 7.8e-158 560.8 379 73.9
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 1.1e-156 557.0 379 73.1
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 4.3e-156 555.1 379 72.3
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 1.6e-155 553.1 380 73.9
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 2.8e-155 552.4 378 74.1
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 6.2e-155 551.2 379 74.4
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 8.1e-155 550.8 380 73.2
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 1.4e-154 550.1 379 73.1
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.4e-154 550.1 378 72.8
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 1.8e-154 549.7 377 73.2
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 1.8e-154 549.7 379 72.6
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 2.2e-152 542.7 379 70.7
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 3.7e-152 542.0 379 71.8
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 1.4e-151 540.0 379 72.0
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.4e-151 540.0 379 71.2
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 1.9e-151 539.7 379 71.8
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 1.2e-150 537.0 379 71.2
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 6.0e-150 534.6 377 71.6
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 1.7e-149 533.1 380 70.5
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 1.5e-148 530.0 379 69.9
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 2.5e-148 529.3 380 69.5
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 3.3e-148 528.9 380 70.5
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 4.3e-148 528.5 379 69.9
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 5.6e-148 528.1 379 71.0
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 5.6e-148 528.1 380 69.7
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 5.6e-148 528.1 404 67.8
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 7.3e-148 527.7 403 67.2
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 9.5e-148 527.3 409 66.5
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 1.2e-147 526.9 407 66.8
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 1.6e-147 526.6 380 69.2
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 2.1e-147 526.2 432 64.1
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 3.6e-147 525.4 379 71.5
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 1.8e-146 523.1 377 70.6
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 2.4e-146 522.7 380 68.9
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 3.1e-146 522.3 383 70.0
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 1.2e-145 520.4 389 70.4
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 2.0e-145 519.6 383 69.5
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 2.6e-145 519.2 385 68.6
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 4.4e-145 518.5 380 67.9
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 1.3e-144 516.9 399 66.4
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 6.4e-144 514.6 379 68.1
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 6.4e-144 514.6 383 68.4
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 8.4e-144 514.2 380 68.4
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 1.1e-143 513.8 380 68.9
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 1.4e-143 513.5 362 73.2
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 1.9e-143 513.1 379 70.7
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 1.9e-143 513.1 434 62.4
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 2.4e-143 512.7 379 66.8
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 3.2e-143 512.3 432 64.4
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 4.1e-143 511.9 379 67.0
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 1.6e-142 510.0 379 67.0
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 6.6e-141 504.6 379 66.5
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 3.3e-140 502.3 379 65.7
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 4.3e-140 501.9 379 66.0
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 7.3e-140 501.1 384 67.2
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 9.6e-140 500.7 391 65.0
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.2e-139 500.4 379 66.2
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 1.6e-139 500.0 373 66.2
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 6.2e-139 498.0 380 67.4
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 1.1e-138 497.3 379 66.2
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 4.0e-138 495.4 379 65.4
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 5.2e-138 495.0 379 65.4
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.2e-137 493.8 379 65.7
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 2.0e-137 493.0 379 64.6
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 4.4e-137 491.9 356 70.8
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 9.9e-137 490.7 382 65.7
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 9.9e-137 490.7 375 64.8
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 1.3e-136 490.3 382 65.4
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 2.2e-136 489.6 377 64.5
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 2.9e-136 489.2 379 64.4
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 1.9e-135 486.5 379 64.9
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 9.3e-135 484.2 380 65.3
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 2.1e-134 483.0 380 65.5
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 3.5e-134 482.3 380 63.7
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 4.6e-134 481.9 380 65.0
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 2.3e-133 479.6 380 65.0
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 2.3e-133 479.6 380 65.0
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 2.1e-131 473.0 397 61.7
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 4.8e-131 471.9 386 62.4
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 2.4e-130 469.5 410 59.5
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 1.2e-129 467.2 459 55.1
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 9.9e-129 464.2 388 62.6
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 8.4e-128 461.1 322 70.5
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.1e-127 460.7 379 61.5
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 2.1e-123 446.4 384 60.7
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 5.3e-122 441.8 382 59.7
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.5e-121 440.3 379 61.5
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.2e-120 436.4 382 60.5
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 8.4e-120 434.5 382 61.0
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 1.4e-119 433.7 379 58.8
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 4.3e-116 422.2 276 78.6
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 4.6e-110 402.1 387 54.0
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 1.3e-109 400.6 410 54.1
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 3.3e-108 396.0 277 72.2
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 7.2e-103 378.3 388 53.6
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 2.5e-71 273.5 245 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 3.6e-70 269.6 413 39.0
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 5.7e-68 262.3 460 38.0
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 4.7e-62 242.7 158 74.1
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.2e-60 238.0 158 73.4
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 5.7e-60 235.7 161 72.0
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.0e-48 198.4 149 67.1
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.3e-48 198.0 161 62.7
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 1.2e-46 191.4 342 37.1
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.4e-42 177.2 129 65.1
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 5.6e-39 166.0 140 55.0
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 7.3e-39 165.6 123 66.7
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 2.1e-33 147.5 109 71.6
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 1.5e-31 141.4 102 63.7
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 9.9e-28 128.6 103 59.2
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 6.2e-22 109.4 84 64.3
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 5.3e-21 106.3 95 60.0
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 9.3e-10 68.9 124 36.3
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 7.9e-09 65.9 39 79.5
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 1.8e-08 64.7 39 76.9


User provided reference genes

Program Settings