Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 0.0e+00 1426.4 961 100.0
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 0.0e+00 1370.5 961 95.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 0.0e+00 1361.3 961 94.8
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 0.0e+00 1242.3 966 85.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 0.0e+00 1214.5 966 87.6
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 0.0e+00 1164.4 922 87.2
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 0.0e+00 1130.2 983 83.4
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 4.7e-244 848.6 940 66.8
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.2e-234 817.4 918 71.8
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.7e-231 806.2 851 73.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.9e-231 804.7 918 71.5
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 9.6e-229 797.7 913 68.9
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.8e-228 796.2 954 70.6
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 4.0e-227 792.3 934 69.5
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.0e-226 790.0 987 66.1
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 7.6e-226 788.1 899 68.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.1e-224 784.3 897 72.7
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.1e-224 784.3 895 68.8
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 7.1e-224 781.6 927 61.5
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 1.8e-222 776.9 896 71.0
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 2.5e-221 773.1 909 65.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 4.3e-221 772.3 900 68.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 5.6e-221 771.9 877 67.7
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.1e-220 770.0 809 78.6
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.7e-220 769.2 919 71.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 2.9e-217 759.6 921 68.3
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.1e-215 753.4 898 70.3
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.9e-214 749.2 917 61.9
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.5e-213 747.3 872 70.5
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.3e-213 746.1 953 67.8
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 5.7e-213 745.3 909 62.3
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.7e-213 745.3 881 69.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 9.6e-213 744.6 948 67.2
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.3e-212 744.2 944 68.0
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.8e-211 740.3 899 65.2
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.9e-211 738.4 849 65.6
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.6e-210 736.5 836 71.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 3.8e-209 732.6 915 68.0
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 1.1e-208 731.1 910 63.3
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.5e-208 729.9 911 68.1
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 9.3e-208 728.0 909 69.2
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.1e-207 726.9 966 64.6
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.1e-207 726.9 851 68.6
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 2.1e-207 726.9 914 67.9
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.8e-206 723.8 916 68.1
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 3.9e-206 722.6 922 66.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 1.1e-205 721.1 913 68.7
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.9e-205 720.3 913 68.7
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.6e-204 717.2 869 68.0
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 8.2e-204 714.9 977 62.3
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.4e-203 714.1 906 69.0
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 2.4e-203 713.4 850 68.1
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 5.3e-203 712.2 980 64.8
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.2e-202 711.1 832 72.4
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 3.4e-202 709.5 815 71.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.4e-202 709.5 812 72.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 4.5e-202 709.1 819 71.7
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.9e-201 706.4 834 71.0
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 3.8e-201 706.1 919 66.9
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.8e-201 706.1 840 71.3
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.5e-201 705.3 840 71.3
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 4.2e-200 702.6 813 70.8
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 5.5e-200 702.2 822 69.8
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.5e-200 702.2 892 66.6
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.6e-199 700.7 843 70.7
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.7e-199 699.9 889 66.5
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 6.1e-199 698.7 832 70.7
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 6.1e-199 698.7 819 70.8
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 6.1e-199 698.7 833 69.7
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.4e-198 697.6 910 63.6
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.8e-198 697.2 993 62.6
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 3.9e-198 696.0 833 68.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 3.9e-198 696.0 893 68.1
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.1e-197 694.5 799 70.7
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 6.3e-196 688.7 889 65.7
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.1e-195 688.0 814 70.6
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 6.9e-195 685.3 839 69.0
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 9.1e-195 684.9 880 65.2
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 1.0e-193 681.4 812 70.0
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 6.5e-193 678.7 833 70.8
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.5e-192 675.6 853 67.9
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 9.4e-192 674.9 818 69.8
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 4.7e-191 672.5 894 66.1
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 6.1e-191 672.2 808 71.3
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.0e-190 669.8 818 69.7
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 2.6e-189 666.8 854 63.9
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 9.7e-189 664.8 833 63.3
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.2e-188 663.7 875 65.4
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 7.0e-187 658.7 806 70.5
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 2.0e-186 657.1 817 60.7
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.2e-185 653.7 831 66.7
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 7.2e-184 648.7 796 70.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.1e-183 647.1 828 67.9
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 9.7e-181 638.3 827 63.5
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.7e-180 637.5 810 67.7
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 6.3e-180 635.6 820 65.9
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 4.1e-179 632.9 803 68.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 5.9e-178 629.0 909 62.0
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.5e-176 624.4 881 63.1
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 4.2e-176 622.9 807 68.8
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.2e-175 621.3 879 59.2
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.4e-174 617.8 824 62.6
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.8e-174 617.5 804 66.8
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.2e-173 614.8 909 62.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 1.1e-171 608.2 833 64.1
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 1.8e-171 607.4 896 56.5
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 7.0e-171 605.5 948 59.5
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 1.6e-170 604.4 810 66.8
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 2.2e-169 600.5 865 59.3
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 5.0e-169 599.4 951 59.1
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 8.5e-169 598.6 890 63.4
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.9e-168 597.4 875 62.5
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.6e-167 594.3 965 58.1
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-167 594.3 868 57.6
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 4.7e-167 592.8 909 60.9
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 8.0e-167 592.0 811 65.2
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 5.2e-166 589.3 922 59.8
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 6.8e-166 589.0 923 59.7
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-165 588.2 913 59.5
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-165 587.8 868 61.6
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.0e-165 587.4 898 60.6
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 5.7e-165 585.9 804 66.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 4.1e-163 579.7 804 64.7
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.6e-162 577.8 868 56.3
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-162 577.8 868 56.3
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.7e-162 577.0 866 58.1
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.5e-160 571.2 820 57.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 5.6e-160 569.3 807 61.5
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-159 567.8 807 61.7
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 8.0e-159 565.5 743 63.1
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.5e-157 561.2 794 61.6
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.5e-157 561.2 730 60.8
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 7.3e-152 542.3 859 56.6
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 7.3e-152 542.3 806 58.9
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 8.9e-150 535.4 809 63.2
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.6e-149 533.9 854 59.4
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 6.0e-146 522.7 806 58.8
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.5e-144 517.3 722 66.3
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 3.4e-141 506.9 688 71.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.9e-140 503.1 827 52.7
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.1e-139 501.9 782 51.2
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 6.6e-137 492.7 655 77.9
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.7e-135 486.5 691 63.1
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.2e-130 471.9 915 51.3
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.5e-130 470.3 634 65.0
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 3.5e-130 470.3 903 38.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.3e-128 463.4 838 48.1
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 7.1e-123 446.0 517 69.8
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.3e-121 441.0 928 47.1
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 7.1e-115 419.5 592 62.3
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 6.0e-114 416.4 799 50.7
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.1e-110 404.1 898 45.9
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 9.9e-109 399.1 855 52.2
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.1e-103 381.3 645 68.8
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 3.9e-97 360.5 648 60.0
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.7e-96 356.7 314 72.6
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 5.3e-94 350.1 508 48.8
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 6.1e-90 336.7 963 44.0
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 7.9e-90 336.3 745 47.1
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 3.3e-88 330.9 482 49.4
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-85 322.0 1301 29.5
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.3e-79 302.4 610 58.0
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 8.5e-76 289.7 271 67.5
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 5.2e-73 280.4 302 84.4
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 3.6e-66 257.7 159 78.6
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.2e-51 207.6 263 49.8
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 3.6e-50 204.5 225 52.4
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.8e-33 149.1 178 49.4
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.6e-29 136.0 88 79.5
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.3e-28 132.9 81 75.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 6.2e-26 124.0 120 55.8
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.3e-20 105.5 66 80.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 3.9e-20 104.8 88 62.5
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 7.6e-16 90.5 136 80.9
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.9e-15 88.6 184 33.7
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.7e-10 71.2 59 54.2
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 2.6e-08 65.5 208 26.9


User provided reference genes

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