Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.5e-187 658.7 349 100.0
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.5e-168 596.3 350 89.1
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.5e-166 589.0 349 88.5
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.0e-164 583.6 349 88.8
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.5e-147 526.6 347 74.4
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.0e-147 526.2 347 79.0
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.3e-146 523.5 349 77.4
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.7e-146 523.1 349 76.2
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 8.2e-146 520.8 345 75.4
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 2.4e-145 519.2 353 72.2
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 7.0e-145 517.7 347 76.7
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.2e-143 512.7 341 75.4
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 5.0e-143 511.5 347 77.2
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 5.0e-143 511.5 349 72.5
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.1e-142 510.4 347 72.3
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.5e-142 509.2 349 71.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.2e-142 508.4 349 74.5
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.2e-142 508.4 349 74.5
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 5.5e-142 508.1 349 70.5
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 5.5e-142 508.1 344 74.7
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 7.2e-142 507.7 344 76.2
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 9.4e-142 507.3 348 71.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.6e-141 505.4 344 71.2
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.4e-140 503.4 344 71.8
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 2.3e-140 502.7 350 75.1
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 2.3e-140 502.7 349 73.6
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 5.2e-140 501.5 348 72.4
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.2e-139 500.4 349 71.1
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 1.5e-139 500.0 349 73.6
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.0e-139 499.6 349 69.3
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 2.6e-139 499.2 349 69.6
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 3.3e-139 498.8 349 70.8
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 3.3e-139 498.8 351 74.4
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.4e-139 498.4 344 74.1
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-138 496.5 360 68.9
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 2.2e-138 496.1 346 72.3
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 6.3e-138 494.6 349 71.6
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.4e-137 493.4 348 75.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.8e-137 493.0 349 72.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.1e-137 492.3 351 71.5
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 5.3e-137 491.5 346 68.5
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 9.1e-137 490.7 349 70.5
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 9.1e-137 490.7 351 72.9
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.2e-136 490.3 350 71.4
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.0e-136 489.6 348 76.7
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 2.7e-136 489.2 350 69.1
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.7e-136 489.2 351 71.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 3.5e-136 488.8 349 72.8
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.2e-135 486.1 349 75.4
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.9e-135 485.7 349 71.1
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 2.9e-135 485.7 349 68.8
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.5e-134 483.4 351 68.1
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.5e-134 483.4 343 70.8
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 2.5e-134 482.6 344 72.7
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 5.5e-134 481.5 349 70.8
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 9.4e-134 480.7 349 69.6
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.6e-133 479.9 349 70.2
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.7e-133 478.4 347 74.4
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 6.1e-133 478.0 344 73.3
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.4e-132 476.9 350 67.7
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 2.3e-132 476.1 347 74.1
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.8e-132 474.6 349 71.9
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.8e-132 474.2 349 71.6
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-131 473.8 349 69.3
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.5e-131 473.4 350 70.0
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.5e-131 473.4 351 75.2
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.0e-131 473.0 349 73.4
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.6e-131 472.6 350 72.6
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 4.4e-131 471.9 349 68.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 4.4e-131 471.9 353 70.3
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.5e-131 471.1 347 69.2
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.3e-130 470.3 350 69.1
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 2.2e-130 469.5 344 71.5
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.7e-130 468.8 349 67.3
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 4.8e-130 468.4 349 65.9
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.4e-129 466.8 351 72.4
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 3.1e-129 465.7 344 70.1
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 7.0e-129 464.5 347 70.0
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.6e-128 463.4 347 64.8
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.6e-128 463.4 370 64.1
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 2.7e-128 462.6 349 68.5
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.5e-128 461.8 349 70.5
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 4.5e-128 461.8 344 68.9
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.0e-127 460.7 350 68.0
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.9e-127 459.1 344 66.6
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.8e-127 458.8 344 66.3
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 8.5e-127 457.6 348 68.4
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 7.2e-126 454.5 348 68.1
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 9.5e-126 454.1 349 67.9
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 9.5e-126 454.1 349 70.2
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.6e-125 453.4 349 67.3
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.1e-125 453.0 348 67.8
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.8e-125 452.6 350 65.4
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 4.7e-125 451.8 449 55.2
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 8.0e-125 451.1 349 67.6
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.8e-124 449.9 349 67.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 3.0e-124 449.1 349 68.2
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 4.0e-124 448.7 349 67.6
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 1.2e-123 447.2 327 65.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.4e-123 445.7 310 71.3
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.7e-122 443.4 351 66.7
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.1e-121 440.7 345 65.5
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 5.4e-121 438.3 344 67.4
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 9.2e-121 437.6 350 65.1
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.6e-120 436.8 350 65.4
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.0e-120 436.4 350 62.3
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.0e-120 436.4 364 62.9
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 3.5e-120 435.6 349 65.6
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 7.8e-120 434.5 345 60.6
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.0e-119 434.1 350 66.9
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.0e-119 434.1 353 67.1
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.9e-119 432.6 349 62.2
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 6.6e-119 431.4 351 62.4
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 6.6e-119 431.4 352 66.5
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.9e-118 429.9 349 71.3
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.3e-118 428.7 347 59.9
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.1e-117 426.4 347 59.4
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 8.0e-117 424.5 308 72.4
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.3e-116 422.9 347 64.3
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.7e-114 415.6 254 79.1
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 3.7e-114 415.6 348 57.8
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 4.9e-114 415.2 349 57.9
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.2e-113 412.5 347 58.2
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.4e-113 411.8 347 64.6
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 5.4e-113 411.8 349 57.9
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 5.9e-112 408.3 295 74.2
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 3.9e-111 405.6 348 59.2
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.3e-110 402.1 431 57.5
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.4e-108 397.1 349 60.2
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.0e-107 393.3 350 55.7
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.7e-106 390.2 297 76.1
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 4.9e-106 388.7 300 66.0
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 4.1e-105 385.6 293 71.3
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 4.6e-104 382.1 350 53.1
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.3e-102 375.9 340 58.2
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 2.1e-101 373.2 304 64.5
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 1.9e-94 350.1 297 61.3
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.3e-94 349.0 349 58.2
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 7.6e-91 338.2 247 68.4
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 3.8e-90 335.9 248 70.6
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 5.6e-86 322.0 293 58.4
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 9.6e-86 321.2 249 69.5
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 8.1e-85 318.2 280 62.9
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.1e-84 317.8 290 59.3
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 3.1e-84 316.2 227 72.2
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.6e-83 311.6 247 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 3.8e-82 309.3 341 42.8
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 8.4e-82 308.1 346 47.7
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-81 307.0 240 66.2
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 9.3e-81 304.7 343 50.7
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 9.6e-78 294.7 187 75.9
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.4e-76 290.0 345 40.6
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.7e-74 283.9 247 60.3
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 3.8e-74 282.7 346 40.5
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 5.4e-73 278.9 242 55.4
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.6e-70 268.9 253 52.6
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 7.4e-70 268.5 247 63.6
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.7e-69 266.2 248 57.3
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.1e-63 245.7 242 47.9
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 8.7e-63 245.0 235 52.3
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.1e-62 244.6 130 89.2
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.1e-62 244.6 145 77.9
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-48 196.8 140 70.0
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 3.2e-41 173.3 102 77.5
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 2.0e-38 164.1 120 71.7
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 2.6e-38 163.7 124 67.7
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.7e-38 162.5 115 70.4
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-37 161.0 112 70.5
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.6e-27 127.9 74 79.7
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.9e-27 125.9 349 28.1
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 7.5e-22 109.0 145 35.2
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.1e-17 95.1 54 72.2
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.2e-17 93.6 54 81.5
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 6.3e-13 79.3 220 27.3
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 5.9e-11 72.8 135 34.8
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 2.9e-10 70.5 78 66.7
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 3.6e-08 63.5 45 66.7
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 8.0e-08 62.4 103 36.9
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 8.9e-07 58.9 142 27.5


User provided reference genes

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