Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 2.6e-65 251.9 127 100.0
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.2e-62 243.0 127 93.7
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 2.8e-51 205.3 129 81.4
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.5e-44 183.0 134 73.1
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.9e-44 182.6 138 72.5
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.5e-44 182.2 132 74.2
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 5.6e-36 154.5 134 61.9
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 7.4e-36 154.1 121 64.5
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 7.4e-36 154.1 105 74.3
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 1.3e-35 153.3 121 64.5
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 7.6e-33 144.1 130 60.8
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 1.3e-32 143.3 118 63.6
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 3.8e-32 141.7 124 60.5
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 4.9e-32 141.4 122 61.5
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 6.4e-32 141.0 127 59.1
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 8.4e-32 140.6 124 58.9
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 8.4e-32 140.6 127 57.5
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 1.9e-31 139.4 122 61.5
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 1.9e-31 139.4 126 57.1
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.9e-31 139.4 127 57.5
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 2.4e-31 139.0 132 58.3
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 9.3e-31 137.1 125 59.2
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.2e-30 136.7 123 65.0
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.6e-30 136.3 127 56.7
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 1.6e-30 136.3 121 56.2
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 1.6e-30 136.3 125 58.4
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 2.1e-30 136.0 124 55.6
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 2.7e-30 135.6 125 54.4
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 3.5e-30 135.2 127 59.1
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 4.6e-30 134.8 127 55.1
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 1.3e-29 133.3 113 57.5
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 1.8e-29 132.9 135 57.0
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 1.8e-29 132.9 113 61.1
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 2.3e-29 132.5 118 57.6
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 3.0e-29 132.1 113 59.3
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 3.0e-29 132.1 114 57.9
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 3.9e-29 131.7 123 55.3
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 6.7e-29 131.0 125 56.0
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 6.7e-29 131.0 127 57.5
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 1.1e-28 130.2 124 56.5
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 2.5e-28 129.0 127 53.5
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 3.3e-28 128.6 127 53.5
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 4.3e-28 128.3 117 57.3
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 2.1e-27 125.9 113 58.4
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 2.1e-27 125.9 117 55.6
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 2.8e-27 125.6 123 53.7
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 4.8e-27 124.8 129 56.6
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 8.2e-27 124.0 123 56.1
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 8.2e-27 124.0 129 55.0
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 1.1e-26 123.6 125 54.4
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.1e-26 123.6 129 53.5
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 1.1e-26 123.6 121 54.5
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 2.4e-26 122.5 122 55.7
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 6.9e-26 120.9 125 54.4
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 9.0e-26 120.6 121 50.4
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 1.2e-25 120.2 120 52.5
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 4.5e-25 118.2 105 57.1
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 5.8e-25 117.9 124 53.2
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 1.7e-24 116.3 119 52.1
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.7e-24 116.3 127 52.0
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.7e-24 116.3 121 50.4
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.9e-24 115.5 126 51.6
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 2.9e-24 115.5 115 56.5
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 2.9e-24 115.5 123 50.4
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 4.9e-24 114.8 124 51.6
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.1e-23 113.6 122 53.3
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.4e-23 113.2 120 50.8
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.9e-23 112.8 123 51.2
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.5e-23 112.5 116 52.6
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 4.2e-23 111.7 120 49.2
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 5.5e-23 111.3 128 53.1
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 5.5e-23 111.3 124 50.8
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 9.3e-23 110.5 120 50.8
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 1.2e-22 110.2 116 51.7
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 2.1e-22 109.4 128 50.8
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 2.7e-22 109.0 128 50.8
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 7.9e-22 107.5 119 47.1
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 3.9e-21 105.1 126 44.4
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 3.9e-21 105.1 129 49.6
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 3.3e-20 102.1 134 44.8
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 3.3e-20 102.1 116 52.6
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 3.3e-20 102.1 63 74.6
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.6e-19 99.8 113 49.6
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 1.6e-19 99.8 127 48.0
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 1.6e-19 99.8 127 48.0
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 1.6e-19 99.8 127 48.0
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.2e-19 99.4 129 46.5
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 3.7e-19 98.6 128 46.1
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 4.8e-19 98.2 63 69.8
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 4.8e-19 98.2 63 69.8
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 4.8e-19 98.2 122 45.9
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 6.3e-19 97.8 110 51.8
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 8.2e-19 97.4 107 50.5
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 8.2e-19 97.4 128 46.1
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 1.1e-18 97.1 121 48.8
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 1.8e-18 96.3 60 75.0
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 9.0e-18 94.0 136 45.6
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 9.0e-18 94.0 136 45.6
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 2.6e-17 92.4 130 46.9
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 3.4e-17 92.0 133 47.4
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 3.4e-17 92.0 116 46.6
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 7.6e-17 90.9 128 47.7
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 1.2e-14 83.6 173 37.0
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 2.7e-14 82.4 70 57.1
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 3.6e-14 82.0 109 43.1
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 3.6e-14 82.0 124 44.4
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 3.6e-14 82.0 124 44.4
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 6.1e-14 81.3 107 46.7
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 3.9e-13 78.6 107 42.1
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 8.8e-13 77.4 87 52.9
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 1.9e-12 76.3 116 47.4
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 5.9e-09 64.7 136 33.1
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 2.5e-07 59.3 115 34.8
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 7.2e-07 57.8 45 55.6
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 9.4e-07 57.4 45 57.8
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 1.2e-06 57.0 62 43.5
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.6e-06 56.6 62 43.5
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 2.1e-06 56.2 27 85.2
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 2.1e-06 56.2 62 43.5
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.1e-06 56.2 62 43.5
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.1e-06 56.2 62 43.5
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.1e-06 56.2 62 43.5
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.1e-06 56.2 62 43.5
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 2.7e-06 55.8 62 43.5
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 2.7e-06 55.8 53 54.7
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 2.7e-06 55.8 107 36.4
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 2.7e-06 55.8 66 42.4
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 3.6e-06 55.5 62 43.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.6e-06 55.5 54 50.0
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 4.7e-06 55.1 60 45.0
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 4.7e-06 55.1 65 41.5
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 4.7e-06 55.1 62 43.5
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.7e-06 55.1 50 52.0
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 4.7e-06 55.1 62 43.5
CBR_g16096 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-06 54.7 78 42.3
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 6.1e-06 54.7 62 43.5
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 6.1e-06 54.7 50 52.0
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 6.1e-06 54.7 65 41.5
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 6.1e-06 54.7 62 43.5
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 7.9e-06 54.3 51 47.1
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 7.9e-06 54.3 50 52.0
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 7.9e-06 54.3 120 33.3
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 7.9e-06 54.3 62 41.9
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.9e-06 54.3 50 52.0
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 7.9e-06 54.3 51 47.1


User provided reference genes

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