Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 7.3e-80 300.4 146 100.0
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 5.8e-61 237.7 120 95.0
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 6.9e-54 214.2 120 89.2
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 3.1e-46 188.7 137 71.5
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 7.6e-45 184.1 136 72.8
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.5e-40 169.9 119 75.6
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 2.5e-32 142.5 132 57.6
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.1e-30 137.1 135 59.3
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.4e-30 136.7 127 60.6
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 5.3e-30 134.8 136 58.8
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 9.1e-30 134.0 121 61.2
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 2.0e-29 132.9 99 69.7
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.2e-28 129.4 130 58.5
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 2.9e-28 129.0 122 59.0
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 5.0e-28 128.3 102 63.7
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 8.5e-28 127.5 123 59.3
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.1e-27 127.1 133 54.9
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 1.9e-27 126.3 127 54.3
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 3.2e-27 125.6 124 56.5
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 4.2e-27 125.2 133 55.6
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.2e-27 125.2 121 54.5
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 4.2e-27 125.2 130 55.4
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 5.5e-27 124.8 132 56.1
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 7.2e-27 124.4 143 52.4
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.2e-26 123.6 129 56.6
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.2e-26 123.6 150 50.0
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.2e-26 123.6 120 58.3
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 1.2e-26 123.6 123 55.3
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 1.6e-26 123.2 124 58.1
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 2.1e-26 122.9 131 52.7
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 2.7e-26 122.5 132 56.1
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 3.6e-26 122.1 112 57.1
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 7.9e-26 120.9 131 55.0
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 7.9e-26 120.9 130 56.9
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.4e-25 120.2 131 55.0
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 1.4e-25 120.2 123 57.7
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.4e-25 120.2 141 51.1
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 1.4e-25 120.2 130 56.2
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.3e-25 119.4 132 56.1
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 3.0e-25 119.0 129 55.8
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 3.9e-25 118.6 121 55.4
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 3.9e-25 118.6 132 52.3
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 6.7e-25 117.9 124 54.0
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 1.5e-24 116.7 123 52.8
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 2.0e-24 116.3 137 49.6
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 2.0e-24 116.3 140 50.7
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 2.6e-24 115.9 126 54.0
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 2.6e-24 115.9 126 54.0
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 2.6e-24 115.9 125 53.6
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.6e-24 115.9 124 52.4
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 3.3e-24 115.5 127 53.5
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 3.3e-24 115.5 123 55.3
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 3.3e-24 115.5 123 55.3
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 4.4e-24 115.2 157 47.8
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 7.4e-24 114.4 100 62.0
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 7.4e-24 114.4 131 52.7
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 9.7e-24 114.0 126 50.8
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 9.7e-24 114.0 130 52.3
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 9.7e-24 114.0 131 52.7
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 9.7e-24 114.0 125 53.6
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 1.3e-23 113.6 137 54.0
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.3e-23 113.6 109 54.1
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.7e-23 113.2 126 53.2
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 1.7e-23 113.2 130 53.1
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 2.2e-23 112.8 126 52.4
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 2.2e-23 112.8 126 52.4
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 2.2e-23 112.8 126 52.4
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 2.8e-23 112.5 127 52.8
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 3.7e-23 112.1 129 51.9
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 3.7e-23 112.1 167 43.7
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 4.8e-23 111.7 123 52.0
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 4.8e-23 111.7 127 51.2
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 4.8e-23 111.7 167 44.3
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 6.3e-23 111.3 152 47.4
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 6.3e-23 111.3 126 51.6
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 8.2e-23 110.9 133 53.4
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.4e-22 110.2 137 49.6
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.8e-22 109.8 150 47.3
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.8e-22 109.8 121 50.4
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 3.1e-22 109.0 126 52.4
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 3.1e-22 109.0 117 52.1
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.1e-22 109.0 138 52.2
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 4.1e-22 108.6 130 50.8
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 4.1e-22 108.6 123 51.2
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 5.3e-22 108.2 114 51.8
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 5.3e-22 108.2 145 47.6
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.3e-22 108.2 131 50.4
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 7.0e-22 107.8 126 51.6
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 7.0e-22 107.8 126 51.6
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 7.0e-22 107.8 126 51.6
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 9.1e-22 107.5 127 50.4
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 9.1e-22 107.5 123 50.4
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 9.1e-22 107.5 130 52.3
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 9.1e-22 107.5 133 49.6
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 1.2e-21 107.1 143 49.7
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.2e-21 107.1 109 50.5
Peaxi162Scf00417g00054 Petunia axillaris HOM05D004757 ORTHO05D005743 1.2e-21 107.1 76 69.7
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.2e-21 107.1 124 52.4
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 1.5e-21 106.7 135 48.1
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.5e-21 106.7 129 51.2
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.5e-21 106.7 129 51.9
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 2.0e-21 106.3 129 48.8
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 2.0e-21 106.3 129 52.7
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.6e-21 105.9 127 49.6
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 3.4e-21 105.5 126 50.8
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 3.4e-21 105.5 129 51.2
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 3.4e-21 105.5 151 45.0
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 4.5e-21 105.1 133 48.9
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 4.5e-21 105.1 126 51.6
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 4.5e-21 105.1 114 54.4
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 5.9e-21 104.8 136 48.5
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 5.9e-21 104.8 114 51.8
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 7.7e-21 104.4 126 50.0
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 1.0e-20 104.0 121 50.4
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.0e-20 104.0 125 49.6
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 1.3e-20 103.6 126 50.8
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 2.2e-20 102.8 126 50.8
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 2.2e-20 102.8 130 49.2
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 2.9e-20 102.4 141 48.2
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.8e-20 102.1 117 48.7
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 3.8e-20 102.1 121 49.6
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 3.8e-20 102.1 121 49.6
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 8.5e-20 100.9 146 45.2
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 8.5e-20 100.9 123 45.5
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 1.1e-19 100.5 125 46.4
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 2.5e-19 99.4 115 52.2
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 7.2e-19 97.8 131 45.8
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 9.4e-19 97.4 134 47.8
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.2e-18 97.1 121 47.9
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.2e-18 97.1 129 49.6
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 3.6e-18 95.5 108 51.9
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 4.7e-18 95.1 157 40.8
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.7e-18 95.1 132 47.7
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 4.7e-18 95.1 164 42.7
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.9e-17 92.0 134 46.3
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.0e-16 89.7 149 43.0
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 3.3e-16 89.0 125 44.8
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 3.3e-16 89.0 155 43.2
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 4.4e-16 88.6 149 42.3
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 4.4e-16 88.6 149 42.3
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 7.4e-16 87.8 149 42.3
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 9.7e-16 87.4 150 41.3
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 1.3e-15 87.0 145 43.4
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.7e-15 86.7 128 43.0
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 1.7e-15 86.7 110 43.6
Nitab4.5_0000957g0030 Nicotiana tabacum HOM05D004757 ORTHO05D005743 1.7e-15 86.7 97 55.7
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 2.8e-15 85.9 166 38.0
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 4.8e-15 85.1 118 44.9
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 1.4e-14 83.6 146 39.0
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.1e-14 82.0 149 38.9
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 8.5e-12 74.3 58 58.6
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 5.5e-11 71.6 104 46.2
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 9.4e-11 70.9 92 52.2
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 1.2e-08 63.9 97 49.5


User provided reference genes

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