Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018695 Solanum tuberosum HOM05D001813 ORTHO05D008124 1.7e-24 115.2 56 100.0
Solyc11g072010.3 Solanum lycopersicum HOM05D001813 ORTHO05D008124 3.2e-15 84.3 42 95.2
Sopen11g029670 Solanum pennellii HOM05D001813 ORTHO05D008124 3.2e-15 84.3 42 95.2
PGSC0003DMG400027401 Solanum tuberosum HOM05D001813 ORTHO05D008124 3.2e-15 84.3 42 95.2
Peaxi162Scf00217g01216 Petunia axillaris HOM05D001813 ORTHO05D008124 7.0e-15 83.2 42 92.9
Thhalv10013841m.g Eutrema salsugineum HOM05D001813 ORTHO05D008124 9.2e-15 82.8 42 90.5
Nitab4.5_0009952g0030 Nicotiana tabacum HOM05D001813 ORTHO05D008124 9.2e-15 82.8 41 92.7
CAN.G280.22 Capsicum annuum HOM05D001813 ORTHO05D008124 2.0e-14 81.6 42 90.5
Potri.004G196200 Populus trichocarpa HOM05D001813 ORTHO05D008124 2.7e-14 81.3 42 90.5
Sabra04G0133000 Salix brachista HOM05D001813 ORTHO05D008124 2.7e-14 81.3 42 90.5
Carub.0006s1936 Capsella rubella HOM05D001813 ORTHO05D008124 7.8e-14 79.7 42 85.7
Ciclev10031821m.g Citrus clementina HOM05D001813 ORTHO05D008124 7.8e-14 79.7 42 88.1
Dinv05236 Davidia involucrata HOM05D001813 ORTHO05D008124 7.8e-14 79.7 42 88.1
Eucgr.J00623 Eucalyptus grandis HOM05D001813 ORTHO05D008124 7.8e-14 79.7 42 85.7
Gohir.A03G035300 Gossypium hirsutum HOM05D001813 ORTHO05D008124 7.8e-14 79.7 42 88.1
Gohir.D03G132900 Gossypium hirsutum HOM05D001813 ORTHO05D008124 7.8e-14 79.7 42 88.1
Gorai.003G140000 Gossypium raimondii HOM05D001813 ORTHO05D008124 7.8e-14 79.7 42 88.1
Manes.04G055488 Manihot esculenta HOM05D001813 ORTHO05D008124 7.8e-14 79.7 42 88.1
QL01p020357 Quercus lobata HOM05D001813 ORTHO05D008124 1.0e-13 79.3 41 87.8
Glyma.20G053200 Glycine max HOM05D001813 ORTHO05D008124 1.3e-13 79.0 42 85.7
COL.COLO4_18373 Corchorus olitorius HOM05D001813 ORTHO05D008124 1.7e-13 78.6 42 85.7
Duzib168G1187 Durio zibethinus HOM05D001813 ORTHO05D008124 1.7e-13 78.6 41 87.8
Lj2A924G26 Lonicera japonica HOM05D001813 ORTHO05D008124 1.7e-13 78.6 41 85.4
Thecc.09G336900 Theobroma cacao HOM05D001813 ORTHO05D008124 1.7e-13 78.6 42 85.7
Atru.chr3.2923 Acer truncatum HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 85.7
Cpa.g.sc103.70 Carica papaya HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 83.3
DCAR_002126 Daucus carota HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 83.3
FvH4_3g27120 Fragaria vesca HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 85.7
FAN11G0469 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 85.7
FAN16G2170 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 85.7
RcHm_v2.0_Chr5g0049661 Rosa chinensis HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 85.7
PGSC0003DMG400018575 Solanum tuberosum HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 88.1
TWI31G1397 Tripterygium wilfordii HOM05D001813 ORTHO05D008124 2.3e-13 78.2 42 85.7
Haze_23659 Corylus avellana HOM05D001813 ORTHO05D008124 3.0e-13 77.8 41 85.4
Lj2C922G2 Lonicera japonica HOM05D001813 ORTHO05D008124 3.0e-13 77.8 55 65.5
MD11G1179300 Malus domestica HOM05D001813 ORTHO05D008124 3.0e-13 77.8 42 83.3
SalBow3G4352 Salvia bowleyana HOM05D001813 ORTHO05D008124 3.0e-13 77.8 40 90.0
Nn7g37283 Nelumbo nucifera HOM05D001813 ORTHO05D008124 3.9e-13 77.4 40 87.5
Lsat_1_v5_gn_6_79520 Lactuca sativa HOM05D001813 ORTHO05D008124 5.0e-13 77.0 40 87.5
Prupe.5G009800 Prunus persica HOM05D001813 ORTHO05D008124 5.0e-13 77.0 42 83.3
THA.LOC104810965 Tarenaya hassleriana HOM05D001813 ORTHO05D008124 5.0e-13 77.0 42 85.7
unitig_699.g19161 Utricularia gibba HOM05D001813 ORTHO05D008124 5.0e-13 77.0 40 87.5
Ah.08g222760 Amaranthus hybridus HOM05D001813 ORTHO05D008124 6.6e-13 76.6 40 85.0
arahy.Tifrunner.gnm1.ann1.876Z5Z Arachis hypogaea HOM05D001813 ORTHO05D008124 6.6e-13 76.6 42 83.3
arahy.Tifrunner.gnm1.ann1.TY5MIX Arachis hypogaea HOM05D001813 ORTHO05D008124 6.6e-13 76.6 42 83.3
BraA10t43979Z Brassica rapa HOM05D001813 ORTHO05D008124 6.6e-13 76.6 54 72.2
Lalb_Chr02g0158501 Lupinus albus HOM05D001813 ORTHO05D008124 6.6e-13 76.6 42 81.0
Medtr3g079330 Medicago truncatula HOM05D001813 ORTHO05D008124 6.6e-13 76.6 42 81.0
TAR623G0200 Trochodendron aralioides HOM05D001813 ORTHO05D008124 6.6e-13 76.6 42 85.7
Actinidia07014 Actinidia chinensis HOM05D001813 ORTHO05D008124 8.6e-13 76.3 42 85.7
Aa31LG1G13710 Aethionema arabicum HOM05D001813 ORTHO05D008124 8.6e-13 76.3 40 85.0
AL6G32610 Arabidopsis lyrata HOM05D001813 ORTHO05D008124 8.6e-13 76.3 40 85.0
AT5G21060 Arabidopsis thaliana HOM05D001813 ORTHO05D008124 8.6e-13 76.3 40 85.0
CARHR191810 Cardamine hirsuta HOM05D001813 ORTHO05D008124 8.6e-13 76.3 40 85.0
Migut.N02415 Erythranthe guttata HOM05D001813 ORTHO05D008124 8.6e-13 76.3 40 87.5
Lj6g0025568 Lotus japonicus HOM05D001813 ORTHO05D008124 8.6e-13 76.3 42 81.0
Psat5g109280 Pisum sativum HOM05D001813 ORTHO05D008124 8.6e-13 76.3 42 81.0
Sp6g23480 Schrenkiella parvula HOM05D001813 ORTHO05D008124 8.6e-13 76.3 40 85.0
BcaC04g19501 Brassica carinata HOM05D001813 ORTHO05D008124 1.1e-12 75.9 42 83.3
C09p55020 Brassica napus HOM05D001813 ORTHO05D008124 1.1e-12 75.9 42 83.3
BolC9t58365H Brassica oleracea HOM05D001813 ORTHO05D008124 1.1e-12 75.9 47 76.6
Oeu032072.1 Olea europaea HOM05D001813 ORTHO05D008124 1.1e-12 75.9 40 87.5
Os11g0128800 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 1.1e-12 75.9 40 87.5
Os12g0125400 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 1.1e-12 75.9 40 87.5
PSO675G1710 Papaver somniferum HOM05D001813 ORTHO05D008124 1.1e-12 75.9 42 81.0
SGA_v2.0_scaffold79G25520 Striga asiatica HOM05D001813 ORTHO05D008124 1.1e-12 75.9 40 85.0
PGR119G1182 Punica granatum HOM05D001813 ORTHO05D008124 1.5e-12 75.5 40 82.5
MSTRG.17658 Avicennia marina HOM05D001813 ORTHO05D008124 1.9e-12 75.1 40 85.0
VMungo0540G0768 Vigna mungo HOM05D001813 ORTHO05D008124 1.9e-12 75.1 40 82.5
AUR62001609 Chenopodium quinoa HOM05D001813 ORTHO05D008124 2.5e-12 74.7 40 80.0
AUR62020171 Chenopodium quinoa HOM05D001813 ORTHO05D008124 2.5e-12 74.7 40 80.0
Cc01_g07600 Coffea canephora HOM05D001813 ORTHO05D008124 2.5e-12 74.7 40 85.0
Sc06g0006200 Simmondsia chinensis HOM05D001813 ORTHO05D008124 2.5e-12 74.7 40 82.5
Hund18828 Selenicereus undatus HOM05D001813 ORTHO05D008124 3.3e-12 74.3 40 85.0
HPP92_018006 Vanilla planifolia HOM05D001813 ORTHO05D008124 4.3e-12 73.9 40 82.5
HPP92_026681 Vanilla planifolia HOM05D001813 ORTHO05D008124 4.3e-12 73.9 40 82.5
FAN25G3061 Fragaria x ananassa HOM05D001813 ORTHO05D008124 5.6e-12 73.6 43 83.7
Phvul.L003537 Phaseolus vulgaris HOM05D001813 ORTHO05D008124 5.6e-12 73.6 40 80.0
EL10Ac7g16223 Beta vulgaris HOM05D001813 ORTHO05D008124 7.3e-12 73.2 40 77.5
TPR.G16962 Trifolium pratense HOM05D001813 ORTHO05D008124 7.3e-12 73.2 40 82.5
CSS0030952 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 9.5e-12 72.8 40 85.0
Ca_16236_v3 Cicer arietinum L. HOM05D001813 ORTHO05D008124 9.5e-12 72.8 42 76.2
GSVIVG01037466001 Vitis vinifera HOM05D001813 ORTHO05D008124 9.5e-12 72.8 38 86.8
ATR0068G110 Amborella trichopoda HOM05D001813 ORTHO05D008124 1.2e-11 72.4 40 80.0
A10p19010 Brassica napus HOM05D001813 ORTHO05D008124 1.2e-11 72.4 40 82.5
MBI19_g32309_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 1.2e-11 72.4 42 78.6
Sed0003336 Sechium edule HOM05D001813 ORTHO05D008124 1.2e-11 72.4 38 84.2
ECA240G4767 Erigeron canadensis HOM05D001813 ORTHO05D008124 2.1e-11 71.6 42 83.3
vmacro04107 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 2.1e-11 71.6 40 80.0
ClCG03G014190 Citrullus lanatus HOM05D001813 ORTHO05D008124 2.8e-11 71.2 38 81.6
CsaV3_1G042050 Cucumis sativus L. HOM05D001813 ORTHO05D008124 2.8e-11 71.2 38 81.6
SHI04312 Sapria himalayana HOM05D001813 ORTHO05D008124 2.8e-11 71.2 40 82.5
Rhsim13G0201100 Rhododendron simsii HOM05D001813 ORTHO05D008124 4.7e-11 70.5 40 77.5
HanXRQChr03g0084001 Helianthus annuus HOM05D001813 ORTHO05D008124 3.1e-10 67.8 42 78.6
SMO112G0109 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 4.0e-10 67.4 40 72.5
SMO364G0184 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 4.0e-10 67.4 40 72.5
AagrBONN_evm.TU.Sc2ySwM_228.5806 Anthoceros agrestis HOM05D001813 ORTHO05D008124 1.2e-09 65.9 40 72.5
MBI19_g40249_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 1.5e-09 65.5 40 75.0
CBR_g24080 Chara braunii HOM05D001813 ORTHO05D008124 4.9e-08 60.5 39 71.8


User provided reference genes

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