Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.7e-165 585.5 350 100.0
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 2.6e-155 552.4 350 95.4
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.4e-153 546.6 350 94.6
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.3e-114 417.2 334 82.9
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.3e-111 406.4 355 78.3
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.4e-105 385.2 345 76.2
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 3.3e-94 349.4 337 71.8
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 5.6e-94 348.6 355 68.7
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.1e-93 346.7 358 69.3
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.4e-92 344.0 341 71.6
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.8e-92 343.6 343 70.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.4e-92 343.2 360 66.9
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.0e-92 342.4 363 67.8
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.0e-92 342.4 356 69.1
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.6e-91 339.7 356 68.8
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 5.8e-91 338.6 340 69.4
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.8e-91 338.6 305 78.4
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 9.9e-91 337.8 350 68.9
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 9.3e-89 331.3 343 70.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-88 330.9 347 68.6
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.2e-88 330.9 347 68.6
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.7e-88 329.7 349 66.8
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.7e-88 329.7 338 69.5
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.6e-88 328.9 338 69.8
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.3e-87 327.4 337 68.5
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 2.3e-87 326.6 344 68.3
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.3e-87 326.6 338 69.2
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 3.0e-87 326.2 338 68.0
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 3.0e-87 326.2 338 68.6
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 3.9e-87 325.9 345 68.4
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 3.9e-87 325.9 340 69.4
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 5.1e-87 325.5 341 67.4
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 6.6e-87 325.1 338 68.6
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.5e-86 323.2 344 67.7
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 3.3e-86 322.8 345 67.2
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 5.6e-86 322.0 345 68.7
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 5.6e-86 322.0 339 67.6
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 9.6e-86 321.2 355 58.6
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.3e-85 320.9 342 67.5
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.3e-85 320.9 374 61.2
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.6e-85 320.5 336 66.4
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.4e-84 317.4 341 65.7
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.4e-84 316.6 367 64.3
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.3e-84 315.5 359 64.3
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.6e-83 313.2 306 72.9
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 3.4e-83 312.8 342 66.4
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.2e-82 310.1 338 67.2
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 2.9e-82 309.7 343 65.9
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 3.8e-82 309.3 340 64.7
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.8e-82 309.3 291 75.3
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 6.4e-82 308.5 281 75.8
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.4e-82 308.1 338 66.9
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.1e-81 307.8 368 63.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 5.4e-81 305.4 346 63.9
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.6e-80 303.9 307 69.1
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.1e-80 303.5 354 64.1
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.5e-80 302.8 338 66.0
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 3.5e-80 302.8 281 75.8
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.0e-79 301.2 344 64.0
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 2.3e-79 300.1 191 79.6
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 3.0e-79 299.7 347 63.7
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.9e-79 299.3 349 62.8
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 8.7e-79 298.1 348 62.9
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.1e-78 297.7 323 51.4
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 2.5e-78 296.6 341 64.8
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 3.3e-78 296.2 346 63.3
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 5.6e-78 295.4 346 63.3
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 9.6e-78 294.7 305 69.8
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 2.1e-77 293.5 343 63.3
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 4.8e-77 292.4 340 65.0
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 8.1e-77 291.6 348 62.6
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.4e-76 290.8 346 60.7
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.4e-76 290.8 339 64.6
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.4e-76 290.0 349 61.6
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.1e-76 289.7 280 73.6
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 9.0e-76 288.1 341 58.7
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.0e-75 287.0 334 62.9
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.3e-74 284.3 352 60.8
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 2.2e-74 283.5 284 67.3
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.9e-73 280.4 339 61.4
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 2.5e-73 280.0 283 69.6
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 5.5e-73 278.9 335 63.0
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 1.6e-72 277.3 325 64.0
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 3.0e-71 273.1 339 54.9
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 4.3e-70 269.2 236 61.9
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 6.2e-69 265.4 337 60.2
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.1e-68 264.6 302 66.9
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.7e-66 257.3 341 59.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.8e-66 256.1 220 60.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.5e-66 255.4 173 71.1
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 8.4e-66 255.0 265 72.5
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.4e-65 254.2 340 60.9
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.9e-65 253.8 293 56.7
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 3.2e-65 253.1 337 58.5
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 9.3e-65 251.5 341 53.7
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 3.5e-64 249.6 222 58.6
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 7.9e-64 248.4 279 66.3
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.3e-63 246.9 165 70.3
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.5e-62 243.4 235 77.0
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 3.3e-62 243.0 301 64.1
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.2e-61 240.4 316 46.2
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 3.7e-61 239.6 339 56.3
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 6.3e-61 238.8 338 57.7
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 8.2e-61 238.4 292 62.0
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.8e-60 237.3 311 62.4
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.9e-59 232.3 337 54.9
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.4e-57 227.6 373 37.0
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.6e-56 224.2 165 66.7
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.7e-56 223.4 337 54.0
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 7.9e-56 221.9 416 49.8
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 3.0e-55 219.9 303 58.7
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.2e-51 208.0 244 72.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.6e-51 206.8 339 52.2
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 3.6e-48 196.4 288 59.0
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.4e-47 194.5 272 60.3
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.8e-45 186.8 192 81.2
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 2.6e-43 180.3 192 79.2
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 4.5e-43 179.5 166 91.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 2.6e-38 163.7 181 49.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 8.2e-37 158.7 213 40.8
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 8.2e-37 158.7 160 51.2
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.6e-35 154.5 288 51.7
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.1e-33 148.3 278 52.2
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.2e-30 138.3 117 56.4
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.8e-29 132.9 172 43.0
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.7e-27 127.1 171 42.7
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.5e-27 126.3 171 41.5
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.4e-22 110.2 142 83.1
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.3e-21 108.2 85 57.6
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.2e-19 101.7 107 46.7
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.5e-17 94.0 128 84.4
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.6e-16 91.3 114 47.4
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 4.7e-16 89.7 146 38.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.1e-16 89.4 81 55.6
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.5e-14 84.7 134 61.9
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.8e-12 77.8 122 82.0
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.3e-07 60.8 54 53.7
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.0e-07 60.1 40 65.0
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 6.8e-07 59.3 60 50.0
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.2e-06 58.5 48 54.2
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 1.5e-06 58.2 49 53.1
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 4.4e-06 56.6 54 55.6
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 4.4e-06 56.6 59 47.5
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 7.5e-06 55.8 48 64.6


User provided reference genes

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