Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018575 Solanum tuberosum HOM05D001813 ORTHO05D008124 3.9e-26 120.6 55 100.0
Solyc11g072010.3 Solanum lycopersicum HOM05D001813 ORTHO05D008124 2.8e-16 87.8 46 91.3
Sopen11g029670 Solanum pennellii HOM05D001813 ORTHO05D008124 2.8e-16 87.8 46 91.3
PGSC0003DMG400027401 Solanum tuberosum HOM05D001813 ORTHO05D008124 2.8e-16 87.8 46 91.3
CAN.G280.22 Capsicum annuum HOM05D001813 ORTHO05D008124 6.2e-16 86.7 46 89.1
Peaxi162Scf00217g01216 Petunia axillaris HOM05D001813 ORTHO05D008124 6.2e-16 86.7 46 89.1
Nitab4.5_0009952g0030 Nicotiana tabacum HOM05D001813 ORTHO05D008124 8.2e-16 86.3 45 88.9
Thhalv10013841m.g Eutrema salsugineum HOM05D001813 ORTHO05D008124 1.1e-15 85.9 46 84.8
Eucgr.J00623 Eucalyptus grandis HOM05D001813 ORTHO05D008124 2.4e-15 84.7 46 84.8
Potri.004G196200 Populus trichocarpa HOM05D001813 ORTHO05D008124 2.4e-15 84.7 46 87.0
Sabra04G0133000 Salix brachista HOM05D001813 ORTHO05D008124 2.4e-15 84.7 46 87.0
Glyma.20G053200 Glycine max HOM05D001813 ORTHO05D008124 4.0e-15 84.0 46 84.8
COL.COLO4_18373 Corchorus olitorius HOM05D001813 ORTHO05D008124 5.3e-15 83.6 46 84.8
Thecc.09G336900 Theobroma cacao HOM05D001813 ORTHO05D008124 5.3e-15 83.6 46 84.8
Ciclev10031821m.g Citrus clementina HOM05D001813 ORTHO05D008124 6.9e-15 83.2 46 84.8
Gohir.A03G035300 Gossypium hirsutum HOM05D001813 ORTHO05D008124 6.9e-15 83.2 46 84.8
Gohir.D03G132900 Gossypium hirsutum HOM05D001813 ORTHO05D008124 6.9e-15 83.2 46 84.8
Gorai.003G140000 Gossypium raimondii HOM05D001813 ORTHO05D008124 6.9e-15 83.2 46 84.8
Manes.04G055488 Manihot esculenta HOM05D001813 ORTHO05D008124 6.9e-15 83.2 46 84.8
Carub.0006s1936 Capsella rubella HOM05D001813 ORTHO05D008124 9.0e-15 82.8 46 80.4
QL01p020357 Quercus lobata HOM05D001813 ORTHO05D008124 9.0e-15 82.8 45 84.4
Dinv05236 Davidia involucrata HOM05D001813 ORTHO05D008124 1.5e-14 82.0 46 82.6
Duzib168G1187 Durio zibethinus HOM05D001813 ORTHO05D008124 1.5e-14 82.0 45 84.4
Lj2A924G26 Lonicera japonica HOM05D001813 ORTHO05D008124 1.5e-14 82.0 45 82.2
Prupe.5G009800 Prunus persica HOM05D001813 ORTHO05D008124 1.5e-14 82.0 46 82.6
Atru.chr3.2923 Acer truncatum HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 82.6
arahy.Tifrunner.gnm1.ann1.876Z5Z Arachis hypogaea HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 82.6
arahy.Tifrunner.gnm1.ann1.TY5MIX Arachis hypogaea HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 82.6
DCAR_002126 Daucus carota HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 80.4
FvH4_3g27120 Fragaria vesca HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 82.6
FAN11G0469 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 82.6
FAN16G2170 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 82.6
Lalb_Chr02g0158501 Lupinus albus HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 80.4
Medtr3g079330 Medicago truncatula HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 80.4
RcHm_v2.0_Chr5g0049661 Rosa chinensis HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 82.6
TWI31G1397 Tripterygium wilfordii HOM05D001813 ORTHO05D008124 2.0e-14 81.6 46 82.6
Haze_23659 Corylus avellana HOM05D001813 ORTHO05D008124 2.6e-14 81.3 45 82.2
Lj6g0025568 Lotus japonicus HOM05D001813 ORTHO05D008124 2.6e-14 81.3 46 80.4
MD11G1179300 Malus domestica HOM05D001813 ORTHO05D008124 2.6e-14 81.3 46 80.4
Psat5g109280 Pisum sativum HOM05D001813 ORTHO05D008124 2.6e-14 81.3 46 80.4
SalBow3G4352 Salvia bowleyana HOM05D001813 ORTHO05D008124 2.6e-14 81.3 44 86.4
Nn7g37283 Nelumbo nucifera HOM05D001813 ORTHO05D008124 3.4e-14 80.9 44 84.1
Cpa.g.sc103.70 Carica papaya HOM05D001813 ORTHO05D008124 4.5e-14 80.5 46 78.3
Lsat_1_v5_gn_6_79520 Lactuca sativa HOM05D001813 ORTHO05D008124 4.5e-14 80.5 44 84.1
unitig_699.g19161 Utricularia gibba HOM05D001813 ORTHO05D008124 4.5e-14 80.5 44 84.1
Ah.08g222760 Amaranthus hybridus HOM05D001813 ORTHO05D008124 5.8e-14 80.1 44 81.8
THA.LOC104810965 Tarenaya hassleriana HOM05D001813 ORTHO05D008124 5.8e-14 80.1 46 80.4
TAR623G0200 Trochodendron aralioides HOM05D001813 ORTHO05D008124 5.8e-14 80.1 46 82.6
VMungo0540G0768 Vigna mungo HOM05D001813 ORTHO05D008124 5.8e-14 80.1 44 81.8
Actinidia07014 Actinidia chinensis HOM05D001813 ORTHO05D008124 7.6e-14 79.7 46 82.6
Migut.N02415 Erythranthe guttata HOM05D001813 ORTHO05D008124 7.6e-14 79.7 44 84.1
Aa31LG1G13710 Aethionema arabicum HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 79.5
AL6G32610 Arabidopsis lyrata HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 79.5
AT5G21060 Arabidopsis thaliana HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 79.5
CARHR191810 Cardamine hirsuta HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 79.5
Oeu032072.1 Olea europaea HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 84.1
Os11g0128800 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 84.1
Os12g0125400 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 84.1
PSO675G1710 Papaver somniferum HOM05D001813 ORTHO05D008124 1.0e-13 79.3 46 78.3
Sp6g23480 Schrenkiella parvula HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 79.5
SGA_v2.0_scaffold79G25520 Striga asiatica HOM05D001813 ORTHO05D008124 1.0e-13 79.3 44 81.8
BcaC04g19501 Brassica carinata HOM05D001813 ORTHO05D008124 1.3e-13 79.0 46 78.3
C09p55020 Brassica napus HOM05D001813 ORTHO05D008124 1.3e-13 79.0 46 78.3
PGR119G1182 Punica granatum HOM05D001813 ORTHO05D008124 1.3e-13 79.0 44 79.5
MSTRG.17658 Avicennia marina HOM05D001813 ORTHO05D008124 1.7e-13 78.6 44 81.8
PGSC0003DMG400018695 Solanum tuberosum HOM05D001813 ORTHO05D008124 1.7e-13 78.6 42 88.1
AUR62001609 Chenopodium quinoa HOM05D001813 ORTHO05D008124 2.2e-13 78.2 44 77.3
AUR62020171 Chenopodium quinoa HOM05D001813 ORTHO05D008124 2.2e-13 78.2 44 77.3
Sc06g0006200 Simmondsia chinensis HOM05D001813 ORTHO05D008124 2.2e-13 78.2 44 79.5
TPR.G16962 Trifolium pratense HOM05D001813 ORTHO05D008124 2.2e-13 78.2 44 81.8
Ca_16236_v3 Cicer arietinum L. HOM05D001813 ORTHO05D008124 2.9e-13 77.8 46 76.1
FAN25G3061 Fragaria x ananassa HOM05D001813 ORTHO05D008124 2.9e-13 77.8 47 80.9
Hund18828 Selenicereus undatus HOM05D001813 ORTHO05D008124 2.9e-13 77.8 44 81.8
HPP92_018006 Vanilla planifolia HOM05D001813 ORTHO05D008124 2.9e-13 77.8 44 79.5
HPP92_026681 Vanilla planifolia HOM05D001813 ORTHO05D008124 2.9e-13 77.8 44 79.5
Cc01_g07600 Coffea canephora HOM05D001813 ORTHO05D008124 5.0e-13 77.0 44 79.5
Lj2C922G2 Lonicera japonica HOM05D001813 ORTHO05D008124 5.0e-13 77.0 42 81.0
Phvul.L003537 Phaseolus vulgaris HOM05D001813 ORTHO05D008124 5.0e-13 77.0 42 81.0
EL10Ac7g16223 Beta vulgaris HOM05D001813 ORTHO05D008124 6.5e-13 76.6 44 75.0
GSVIVG01037466001 Vitis vinifera HOM05D001813 ORTHO05D008124 6.5e-13 76.6 44 77.3
CSS0030952 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 8.4e-13 76.3 44 81.8
MBI19_g32309_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 1.1e-12 75.9 46 76.1
A10p19010 Brassica napus HOM05D001813 ORTHO05D008124 1.4e-12 75.5 44 77.3
BraA10t43979Z Brassica rapa HOM05D001813 ORTHO05D008124 1.4e-12 75.5 44 77.3
Sed0003336 Sechium edule HOM05D001813 ORTHO05D008124 1.4e-12 75.5 44 77.3
BolC9t58365H Brassica oleracea HOM05D001813 ORTHO05D008124 1.9e-12 75.1 43 79.1
ECA240G4767 Erigeron canadensis HOM05D001813 ORTHO05D008124 1.9e-12 75.1 46 80.4
vmacro04107 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 1.9e-12 75.1 44 77.3
ATR0068G110 Amborella trichopoda HOM05D001813 ORTHO05D008124 2.5e-12 74.7 44 75.0
SHI04312 Sapria himalayana HOM05D001813 ORTHO05D008124 2.5e-12 74.7 44 79.5
ClCG03G014190 Citrullus lanatus HOM05D001813 ORTHO05D008124 3.2e-12 74.3 44 75.0
CsaV3_1G042050 Cucumis sativus L. HOM05D001813 ORTHO05D008124 3.2e-12 74.3 44 75.0
Rhsim13G0201100 Rhododendron simsii HOM05D001813 ORTHO05D008124 4.2e-12 73.9 44 75.0
HanXRQChr03g0084001 Helianthus annuus HOM05D001813 ORTHO05D008124 2.7e-11 71.2 46 76.1
SMO112G0109 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 2.7e-11 71.2 44 70.5
SMO364G0184 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 2.7e-11 71.2 44 70.5
MBI19_g40249_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 1.3e-10 68.9 44 72.7
AagrBONN_evm.TU.Sc2ySwM_228.5806 Anthoceros agrestis HOM05D001813 ORTHO05D008124 2.3e-10 68.2 44 65.9
CBR_g24080 Chara braunii HOM05D001813 ORTHO05D008124 1.3e-08 62.4 43 67.4


User provided reference genes

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