Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 4.8e-79 298.5 255 100.0
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 2.4e-70 269.6 255 89.0
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.3e-63 247.3 252 85.3
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 2.4e-62 243.0 255 87.5
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 4.1e-62 242.3 252 84.1
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 1.2e-58 230.7 258 81.8
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 3.9e-52 209.1 253 79.1
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 6.8e-41 171.8 251 70.1
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 1.2e-37 161.0 260 55.0
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.6e-37 160.6 248 67.3
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 1.3e-36 157.5 252 66.3
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.7e-36 157.1 240 67.5
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 3.0e-36 156.4 241 69.3
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 1.1e-35 154.5 254 66.1
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 1.1e-35 154.5 252 67.5
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 4.3e-35 152.5 251 65.3
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 8.1e-34 148.3 248 66.1
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.1e-33 147.9 237 66.2
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 1.4e-33 147.5 259 66.0
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 2.4e-33 146.7 249 66.3
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.4e-33 146.7 204 48.5
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 2.4e-33 146.7 242 66.9
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 5.3e-33 145.6 253 65.2
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 5.3e-33 145.6 237 65.4
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.5e-32 144.1 244 62.3
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 3.4e-32 142.9 239 66.5
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 7.6e-32 141.7 244 61.9
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 2.2e-31 140.2 254 63.0
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 4.9e-31 139.0 253 63.2
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 6.4e-31 138.7 255 65.5
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 8.4e-31 138.3 257 65.0
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 1.1e-30 137.9 266 62.0
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 1.4e-30 137.5 252 62.3
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.9e-30 137.1 195 64.6
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 3.2e-30 136.3 274 60.6
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 1.2e-29 134.4 248 63.3
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 1.6e-29 134.0 238 66.8
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.7e-29 133.3 238 66.4
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 4.6e-29 132.5 238 66.4
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 1.0e-28 131.3 241 63.9
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.7e-28 130.6 239 66.1
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 3.0e-28 129.8 267 61.0
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 3.9e-28 129.4 71 85.9
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.1e-28 129.0 238 65.5
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 1.1e-27 127.9 261 58.2
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 1.9e-27 127.1 296 58.4
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 2.5e-27 126.7 263 60.5
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 3.3e-27 126.3 249 61.8
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 3.3e-27 126.3 249 61.8
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 5.6e-27 125.6 245 61.6
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 7.3e-27 125.2 244 62.7
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 7.3e-27 125.2 80 73.8
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 9.6e-27 124.8 252 50.8
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 1.3e-26 124.4 70 80.0
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 2.1e-26 123.6 255 58.8
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 2.8e-26 123.2 74 78.4
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 4.8e-26 122.5 75 74.7
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 4.8e-26 122.5 250 60.8
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 4.8e-26 122.5 250 60.8
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 6.2e-26 122.1 257 59.5
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 8.1e-26 121.7 239 61.9
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 1.4e-25 120.9 258 58.5
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 1.8e-25 120.6 80 73.8
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 2.4e-25 120.2 241 63.1
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 2.4e-25 120.2 242 62.0
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 3.1e-25 119.8 77 71.4
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 4.0e-25 119.4 68 80.9
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 4.0e-25 119.4 254 60.2
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 5.3e-25 119.0 245 60.8
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 9.0e-25 118.2 241 61.8
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 1.2e-24 117.9 248 60.5
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 3.4e-24 116.3 78 71.8
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 4.5e-24 115.9 261 61.7
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 4.5e-24 115.9 261 61.7
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 4.5e-24 115.9 258 58.9
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 5.8e-24 115.5 261 57.1
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 5.8e-24 115.5 262 57.3
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 7.6e-24 115.2 81 69.1
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 9.9e-24 114.8 239 62.3
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 9.9e-24 114.8 239 62.3
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 2.2e-23 113.6 239 62.3
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 2.2e-23 113.6 244 61.5
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 2.9e-23 113.2 266 61.7
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 3.8e-23 112.8 244 58.6
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 3.8e-23 112.8 244 61.1
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 3.8e-23 112.8 255 57.6
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 1.1e-22 111.3 260 59.6
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 2.4e-22 110.2 242 63.6
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 3.2e-22 109.8 72 70.8
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 3.2e-22 109.8 69 72.5
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 3.2e-22 109.8 287 57.1
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 5.4e-22 109.0 79 67.1
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 1.6e-21 107.5 255 58.0
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 1.0e-20 104.8 382 44.5
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 9.6e-19 98.2 71 67.6
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 1.3e-18 97.8 67 70.1
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 6.2e-18 95.5 238 62.2
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 2.4e-17 93.6 73 61.6
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 9.0e-17 91.7 69 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 2.6e-16 90.1 69 58.0
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 2.6e-16 90.1 206 64.6
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 7.6e-16 88.6 78 59.0
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 7.6e-16 88.6 68 61.8
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 7.1e-14 82.0 63 61.9
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 1.2e-13 81.3 204 63.2
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 1.6e-13 80.9 111 45.0
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.7e-13 80.1 204 65.2
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.3e-12 77.8 62 58.1
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 1.5e-11 74.3 81 54.3
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 4.3e-11 72.8 267 50.9
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 5.7e-11 72.4 34 94.1
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 9.6e-11 71.6 105 47.6
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 5.3e-09 65.9 51 52.9
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 6.9e-09 65.5 268 56.0
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 7.6e-08 62.0 45 57.8
Gohir.D08G138080 Gossypium hirsutum HOM05D006475 ORTHO05D007969 8.4e-07 58.5 36 72.2
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 1.1e-06 58.2 203 56.2
Gorai.004G141500 Gossypium raimondii HOM05D006475 ORTHO05D007969 3.2e-06 56.6 36 69.4


User provided reference genes

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