Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.8e-108 396.0 202 100.0
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 7.4e-107 390.6 202 98.5
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 7.4e-107 390.6 202 98.5
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 2.6e-99 365.5 202 91.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.2e-98 362.5 202 91.1
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.1e-97 358.6 202 89.6
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 4.5e-96 354.8 202 88.6
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 4.4e-91 338.2 202 84.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 9.7e-91 337.0 189 89.4
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.8e-90 335.5 201 84.1
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.8e-89 332.8 202 82.7
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.3e-87 326.6 201 80.1
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.7e-87 326.2 202 81.2
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 5.0e-87 324.7 202 79.7
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 6.5e-87 324.3 202 79.2
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 6.5e-87 324.3 201 80.6
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 8.5e-87 323.9 199 79.9
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.5e-86 323.2 202 80.7
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.5e-86 323.2 199 80.4
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.5e-86 323.2 202 80.2
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.5e-86 322.4 200 78.5
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.5e-86 322.4 199 79.9
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.2e-86 322.0 199 79.9
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 4.2e-86 321.6 202 80.2
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 4.2e-86 321.6 202 78.7
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.2e-86 320.9 200 76.5
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 1.6e-85 319.7 201 76.1
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.1e-85 319.3 202 79.7
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.7e-85 318.9 202 80.2
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 2.7e-85 318.9 201 76.6
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.6e-85 318.5 202 78.7
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.7e-85 318.2 200 77.5
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.7e-85 318.2 200 75.5
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 6.1e-85 317.8 202 78.7
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 3.0e-84 315.5 202 79.2
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 4.0e-84 315.1 203 77.8
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 4.0e-84 315.1 202 77.7
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.0e-84 315.1 200 79.0
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 5.2e-84 314.7 201 77.6
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 6.8e-84 314.3 202 78.2
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-83 313.5 191 81.2
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.2e-83 313.5 201 77.1
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.5e-83 313.2 198 76.8
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 3.4e-83 312.0 198 78.8
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 4.4e-83 311.6 203 77.3
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.4e-83 311.6 201 77.1
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 5.7e-83 311.2 202 74.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 5.7e-83 311.2 201 77.1
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 9.8e-83 310.5 202 77.2
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 9.8e-83 310.5 200 78.0
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.7e-82 309.7 199 77.9
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.2e-82 309.3 198 78.3
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 2.8e-82 308.9 201 76.1
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.8e-82 308.9 198 77.8
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 8.3e-82 307.4 193 78.2
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.1e-81 307.0 202 75.7
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.4e-81 305.8 201 75.1
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 3.1e-81 305.4 202 77.7
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 3.1e-81 305.4 201 76.1
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 4.1e-81 305.1 198 77.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 4.1e-81 305.1 198 77.3
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 4.5e-80 301.6 192 79.2
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.0e-79 300.4 201 75.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.0e-79 300.4 201 75.1
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.7e-79 299.7 182 81.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.3e-79 299.3 200 74.5
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.3e-79 299.3 201 74.1
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 2.9e-79 298.9 205 74.1
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.9e-79 298.9 205 74.1
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.0e-79 298.1 200 73.0
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.6e-79 297.7 226 68.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.9e-78 296.2 205 73.7
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.2e-78 295.0 226 67.3
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.6e-77 293.1 202 70.8
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 2.8e-77 292.4 200 72.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 4.7e-77 291.6 201 73.1
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 6.1e-77 291.2 186 79.0
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 6.1e-77 291.2 193 74.6
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 8.0e-77 290.8 192 75.5
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.0e-76 290.4 197 73.6
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.0e-76 290.4 193 75.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 2.3e-76 289.3 190 75.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.2e-76 288.1 200 71.0
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 5.2e-76 288.1 192 75.0
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 5.2e-76 288.1 199 73.4
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 6.8e-76 287.7 199 70.4
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.2e-75 287.0 190 75.3
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.2e-75 287.0 190 75.3
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.2e-75 287.0 193 74.1
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.2e-75 287.0 200 71.0
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 1.5e-75 286.6 201 71.6
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 3.4e-75 285.4 193 72.5
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 7.5e-75 284.3 193 72.0
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.3e-74 283.5 193 72.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.8e-74 282.3 193 72.0
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.8e-74 282.3 193 72.0
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 4.9e-74 281.6 177 78.0
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 6.3e-74 281.2 194 73.7
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.4e-73 280.0 193 71.5
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.4e-73 280.0 191 72.3
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 2.4e-73 279.3 187 74.3
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 4.1e-73 278.5 194 73.2
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 9.2e-73 277.3 177 78.0
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.0e-72 276.2 202 72.3
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 2.7e-72 275.8 202 72.3
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.5e-72 275.0 202 72.3
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.9e-71 272.3 202 72.3
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.6e-71 271.2 174 77.0
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 4.3e-70 268.5 198 68.2
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 5.6e-70 268.1 193 69.4
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.2e-69 266.9 203 66.0
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 2.1e-69 266.2 157 85.4
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 2.1e-69 266.2 157 85.4
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 3.6e-69 265.4 192 65.6
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.8e-68 263.1 179 70.9
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 6.8e-68 261.2 192 67.2
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 2.6e-67 259.2 184 71.7
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 4.4e-67 258.5 204 64.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 5.8e-67 258.1 190 68.9
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 9.8e-67 257.3 178 70.8
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.3e-66 256.9 190 67.9
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 2.0e-64 249.6 200 61.0
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.6e-64 248.4 191 66.5
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 8.6e-63 244.2 162 75.3
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-60 237.3 171 70.8
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.2e-58 229.6 186 65.6
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 7.1e-57 224.6 175 64.0
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.0e-55 220.7 175 62.9
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 6.6e-55 218.0 197 60.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 8.6e-55 217.6 204 59.8
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 3.3e-54 215.7 175 61.1
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 4.9e-50 201.8 192 58.3
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.6e-48 196.8 130 72.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 8.6e-47 191.0 198 53.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 1.9e-46 189.9 111 82.0
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 6.8e-44 181.4 208 53.8
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 4.4e-43 178.7 113 77.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.9e-42 175.3 172 52.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 4.3e-38 162.2 172 47.7
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.6e-37 160.2 95 83.2
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.4e-33 146.4 88 80.7
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 9.3e-25 117.9 70 82.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.6e-24 117.1 156 39.7
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.5e-24 115.9 187 42.2
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 4.3e-22 109.0 156 43.6
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.6e-21 107.1 177 36.2
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.8e-20 103.6 174 35.6
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.8e-20 103.6 67 76.1
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.6e-16 89.0 111 47.7
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.5e-14 83.2 66 56.1
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-12 77.8 62 59.7
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.4e-12 76.6 66 56.1
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.6e-11 73.2 113 42.5
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 7.6e-11 71.6 103 36.9
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 5.0e-10 68.9 71 60.6
CAN.G10322.1 Capsicum annuum HOM05D001108 ORTHO05D115629 4.2e-09 65.9 73 52.1
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 5.5e-09 65.5 38 81.6
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 2.7e-08 63.2 152 33.6


User provided reference genes

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