Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 4.9e-94 347.8 181 100.0
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 3.1e-88 328.6 181 93.4
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.0e-83 313.5 181 91.2
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.0e-46 190.7 202 61.4
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.8e-44 182.6 199 60.8
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 7.0e-40 167.9 213 53.5
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 5.9e-39 164.9 210 53.3
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.9e-38 162.2 211 51.7
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 2.5e-37 159.5 193 54.4
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.2e-34 150.6 202 54.5
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.7e-33 145.6 216 50.5
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 7.8e-31 137.9 105 68.6
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 1.3e-30 137.1 218 48.6
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.7e-30 136.7 203 50.7
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 3.9e-30 135.6 125 59.2
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.1e-29 134.0 222 47.7
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 4.3e-29 132.1 225 46.7
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 2.1e-28 129.8 83 75.9
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 3.6e-28 129.0 178 51.7
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 8.0e-28 127.9 88 71.6
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.1e-27 127.5 91 70.3
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 1.1e-27 127.5 149 51.7
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.4e-27 127.1 202 45.0
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.8e-27 126.7 130 53.1
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 2.3e-27 126.3 197 45.2
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 2.3e-27 126.3 238 42.0
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 2.3e-27 126.3 88 69.3
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 5.2e-27 125.2 200 47.0
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 6.8e-27 124.8 92 69.6
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 8.9e-27 124.4 235 40.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 8.9e-27 124.4 235 40.4
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 8.9e-27 124.4 117 58.1
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 8.9e-27 124.4 112 56.2
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 2.6e-26 122.9 197 43.1
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.6e-26 122.9 194 45.4
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.6e-26 122.9 227 41.4
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 3.4e-26 122.5 172 45.9
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 3.4e-26 122.5 192 47.4
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 3.4e-26 122.5 190 48.9
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.4e-26 122.5 181 49.2
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 4.4e-26 122.1 204 45.6
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 7.5e-26 121.3 229 41.5
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 9.8e-26 120.9 203 43.3
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 9.8e-26 120.9 206 45.1
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.3e-25 120.6 195 44.1
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 1.3e-25 120.6 205 42.4
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 2.2e-25 119.8 227 41.0
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.9e-25 119.4 88 67.0
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 2.9e-25 119.4 112 59.8
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 3.7e-25 119.0 192 45.3
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 3.7e-25 119.0 200 44.5
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 3.7e-25 119.0 83 69.9
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 4.9e-25 118.6 238 40.3
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 4.9e-25 118.6 134 50.7
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 4.9e-25 118.6 89 67.4
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 6.4e-25 118.2 144 51.4
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 6.4e-25 118.2 220 41.8
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 6.4e-25 118.2 145 48.3
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 6.4e-25 118.2 231 45.5
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 6.4e-25 118.2 83 69.9
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 1.1e-24 117.5 79 70.9
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.1e-24 117.5 229 44.5
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 1.1e-24 117.5 97 59.8
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 1.1e-24 117.5 216 44.4
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.4e-24 117.1 99 62.6
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.4e-24 117.1 86 68.6
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.4e-24 117.1 180 47.8
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.9e-24 116.7 198 44.4
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-24 116.7 198 44.4
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.9e-24 116.7 196 41.8
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 2.4e-24 116.3 196 43.9
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 2.4e-24 116.3 139 47.5
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.4e-24 116.3 203 43.8
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 4.1e-24 115.5 229 44.5
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.1e-24 115.5 86 68.6
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 4.1e-24 115.5 210 39.0
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 5.4e-24 115.2 183 43.7
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 7.0e-24 114.8 83 67.5
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 9.2e-24 114.4 209 40.2
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 9.2e-24 114.4 234 41.9
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.2e-23 114.0 86 67.4
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.6e-23 113.6 203 41.4
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.6e-23 113.6 184 43.5
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 2.1e-23 113.2 188 43.6
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.1e-23 113.2 178 46.6
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.1e-23 113.2 178 44.9
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.7e-23 112.8 180 43.3
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 3.5e-23 112.5 177 44.6
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 3.5e-23 112.5 177 44.6
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 3.5e-23 112.5 188 43.6
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 3.5e-23 112.5 137 51.1
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 4.6e-23 112.1 79 70.9
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 6.0e-23 111.7 193 42.5
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 6.0e-23 111.7 214 41.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 6.0e-23 111.7 124 52.4
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 7.8e-23 111.3 223 39.9
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 7.8e-23 111.3 230 40.0
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 7.8e-23 111.3 215 41.4
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.0e-22 110.9 114 55.3
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.3e-22 110.5 109 55.0
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.3e-22 110.5 178 42.7
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.3e-22 110.5 227 42.7
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.7e-22 110.2 218 42.2
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.0e-22 109.4 193 39.4
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 3.9e-22 109.0 79 67.1
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 5.1e-22 108.6 200 42.5
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 6.6e-22 108.2 221 39.8
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 8.6e-22 107.8 71 71.8
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.1e-21 107.5 221 40.3
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 1.5e-21 107.1 86 60.5
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.5e-21 107.1 95 55.8
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 1.9e-21 106.7 77 68.8
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.9e-21 106.7 222 40.5
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 2.5e-21 106.3 91 60.4
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 3.3e-21 105.9 86 60.5
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.3e-21 105.5 229 37.6
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 5.6e-21 105.1 148 47.3
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 7.3e-21 104.8 236 37.7
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 9.5e-21 104.4 101 56.4
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.2e-20 104.0 127 49.6
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 2.8e-20 102.8 81 64.2
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 4.7e-20 102.1 165 40.6
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 4.0e-19 99.0 205 38.5
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 6.8e-19 98.2 109 45.9
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 8.9e-19 97.8 177 40.7
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.2e-18 97.4 199 40.2
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.2e-18 97.4 202 40.6
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 7.5e-18 94.7 110 47.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 9.9e-18 94.4 231 36.8
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.7e-17 93.6 76 60.5
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 2.9e-17 92.8 77 57.1
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.9e-17 92.8 182 41.2
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.9e-17 92.8 182 41.2
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 3.7e-17 92.4 85 58.8
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 4.1e-16 89.0 94 47.9
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.2e-15 87.4 82 52.4
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.6e-15 87.0 164 39.0
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 2.3e-14 83.2 178 37.6
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.2e-09 66.6 186 36.0
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-08 63.2 181 34.8


User provided reference genes

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