Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 1.2e-244 849.4 422 100.0
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 2.2e-233 812.0 429 94.6
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 7.7e-231 803.5 427 94.4
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.3e-209 733.0 428 85.7
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 5.9e-207 724.2 422 86.5
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 4.0e-203 711.4 422 85.1
Peaxi162Scf00767g00524 Petunia axillaris HOM05D007414 ORTHO05D009482 1.3e-166 590.1 385 78.2
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 7.3e-157 557.8 397 71.3
MSTRG.20514 Avicennia marina HOM05D007414 ORTHO05D009482 7.3e-157 557.8 423 66.9
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 1.8e-155 553.1 371 73.3
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 9.9e-154 547.4 430 63.7
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 4.9e-153 545.0 388 69.8
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 5.1e-150 535.0 414 65.5
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 8.7e-150 534.3 427 65.8
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 2.5e-149 532.7 397 66.8
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 1.8e-147 526.6 414 65.0
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 9.0e-147 524.2 392 68.4
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 1.2e-146 523.9 387 67.2
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 2.6e-146 522.7 382 67.3
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 4.5e-146 521.9 427 63.5
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 1.7e-145 520.0 374 69.0
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 2.9e-145 519.2 379 68.3
Lsat_1_v5_gn_4_29901 Lactuca sativa HOM05D007414 ORTHO05D009482 9.3e-144 514.2 416 63.9
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 9.3e-144 514.2 429 62.5
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 7.9e-143 511.1 382 66.2
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 1.0e-142 510.8 397 66.2
HanXRQChr16g0525321 Helianthus annuus HOM05D007414 ORTHO05D009482 1.8e-142 510.0 382 68.6
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 3.0e-142 509.2 375 68.8
ECA234G1800 Erigeron canadensis HOM05D007414 ORTHO05D009482 5.1e-142 508.4 372 68.8
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 2.5e-141 506.1 399 63.7
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 3.3e-141 505.8 383 64.8
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 1.1e-139 500.7 390 66.2
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 6.9e-139 498.0 409 62.3
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 2.6e-138 496.1 399 61.9
Gohir.D10G192600 Gossypium hirsutum HOM05D007414 ORTHO05D009482 7.6e-138 494.6 404 62.4
Gorai.011G215300 Gossypium raimondii HOM05D007414 ORTHO05D009482 1.3e-137 493.8 404 62.4
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 2.9e-137 492.7 376 64.1
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 2.9e-137 492.7 389 62.7
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 3.8e-137 492.3 413 61.7
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 6.5e-137 491.5 371 65.2
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 8.4e-137 491.1 371 65.2
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 8.4e-137 491.1 371 65.2
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 1.4e-136 490.3 423 60.3
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 4.2e-136 488.8 390 62.8
Rhsim01G0124300 Rhododendron simsii HOM05D007414 ORTHO05D009482 4.2e-136 488.8 380 64.7
Glyma.11G155300 Glycine max HOM05D007414 ORTHO05D009482 5.5e-136 488.4 424 59.7
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 7.1e-136 488.0 371 64.7
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 1.6e-135 486.9 404 61.4
VMungo1080G1369 Vigna mungo HOM05D007414 ORTHO05D009482 1.6e-135 486.9 375 64.5
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 8.7e-134 481.1 376 64.1
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 2.5e-133 479.6 426 59.2
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 2.2e-132 476.5 387 62.3
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 4.8e-132 475.3 404 61.9
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 1.8e-131 473.4 421 57.5
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.4e-131 473.0 422 58.8
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 6.9e-131 471.5 431 56.8
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 9.0e-131 471.1 394 60.2
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 2.2e-129 466.5 420 58.3
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 5.0e-129 465.3 376 62.5
Gohir.A06G174800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 6.5e-129 464.9 321 70.1
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 1.4e-128 463.8 376 62.0
Gohir.D06G184800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 9.3e-128 461.1 321 69.5
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 5.7e-125 451.8 418 56.7
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 7.4e-125 451.4 432 55.6
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 1.1e-123 447.6 456 54.2
Manes.15G192920 Manihot esculenta HOM05D007414 ORTHO05D009482 1.1e-123 447.6 381 61.9
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 5.3e-123 445.3 370 59.5
THA.LOC104826727 Tarenaya hassleriana HOM05D007414 ORTHO05D009482 1.3e-121 440.7 371 60.4
Aqoxy1G00360 Aquilegia oxysepala HOM05D007414 ORTHO05D009482 5.0e-121 438.7 417 57.6
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 1.6e-119 433.7 348 62.6
Nn7g36678 Nelumbo nucifera HOM05D007414 ORTHO05D009482 1.4e-118 430.6 359 62.4
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 1.5e-114 417.2 372 57.0
Haze_03038 Corylus avellana HOM05D007414 ORTHO05D009482 5.5e-112 408.7 389 56.8
ATR0745G014 Amborella trichopoda HOM05D007414 ORTHO05D009482 8.2e-108 394.8 379 55.7
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 3.1e-107 392.9 383 53.8
Dinv32026 Davidia involucrata HOM05D007414 ORTHO05D009482 8.5e-105 384.8 258 72.5
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.4e-99 367.5 305 60.3
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 5.2e-94 349.0 289 59.2
Prupe.2G036300 Prunus persica HOM05D007414 ORTHO05D009482 2.0e-93 347.1 247 69.6
SEGI_40936 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 5.7e-93 345.5 391 47.3
Migut.O00949 Erythranthe guttata HOM05D007414 ORTHO05D009482 1.6e-90 337.4 254 68.9
MBI19_g25612_MAGBIO Magnolia biondii HOM05D007414 ORTHO05D009482 5.2e-78 295.8 226 65.0
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 1.5e-64 251.1 412 38.3
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 1.8e-62 244.2 414 37.2
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 1.6e-58 231.1 373 39.1
Zm00001eb128490 Zea mays HOM05D007414 ORTHO05D009482 3.9e-57 226.5 214 57.0
DCAR_000332 Daucus carota HOM05D007414 ORTHO05D009482 8.9e-54 215.3 169 66.3
Nitab4.5_0008639g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.2e-53 214.9 164 68.9
Os01g0272800 Oryza sativa ssp. japonica HOM05D007414 ORTHO05D009482 1.4e-51 208.0 212 52.4
Migut.B01233 Erythranthe guttata HOM05D007414 ORTHO05D009482 9.6e-48 195.3 120 76.7
TPR.G1409 Trifolium pratense HOM05D007414 ORTHO05D009482 1.0e-41 175.3 117 70.1
Lsat_1_v5_gn_0_2021 Lactuca sativa HOM05D007414 ORTHO05D009482 8.2e-15 85.9 75 52.0
MCO02G191 Micromonas commoda HOM05D007414 ORTHO05D009482 1.3e-12 78.6 342 25.4
PRCOL_00005884 Prasinoderma coloniale HOM05D007414 ORTHO05D009482 2.9e-12 77.4 266 28.6
Lsat_1_v5_gn_3_3821 Lactuca sativa HOM05D007414 ORTHO05D009482 6.5e-12 76.3 49 67.3
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 1.4e-09 68.6 268 28.4
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.3e-09 67.8 362 26.2
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 2.3e-09 67.8 385 25.7
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.9e-09 67.0 384 26.0
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 6.7e-09 66.2 397 24.2
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 1.1e-08 65.5 382 24.6
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 3.3e-08 63.9 388 25.3
SEGI_36011 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 3.3e-08 63.9 69 42.0
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.3e-08 63.5 287 26.5
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 4.3e-08 63.5 273 27.8
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 4.3e-08 63.5 389 25.2
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 5.7e-08 63.2 360 23.9
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 7.4e-08 62.8 362 24.9
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 9.7e-08 62.4 400 25.2
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 9.7e-08 62.4 436 23.4
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 1.7e-07 61.6 339 26.3
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.7e-07 61.6 366 24.3
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.7e-07 61.6 355 25.9
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.2e-07 61.2 447 23.3
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 2.2e-07 61.2 280 26.8
MD02G1286500 Malus domestica HOM05D007414 ORTHO05D009482 2.2e-07 61.2 75 49.3
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 2.2e-07 61.2 368 25.0
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 2.2e-07 61.2 368 25.0
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 2.8e-07 60.8 322 27.0
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 3.7e-07 60.5 394 24.1
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 4.8e-07 60.1 350 24.9
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 4.8e-07 60.1 361 24.1
PRCOL_00006348 Prasinoderma coloniale HOM05D007414 ORTHO05D333730 4.8e-07 60.1 118 36.4
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 6.3e-07 59.7 267 26.6
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 6.3e-07 59.7 364 24.2
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 6.3e-07 59.7 276 27.5
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 8.2e-07 59.3 358 24.6
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.4e-06 58.5 274 24.5
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.8e-06 58.2 276 26.4
Cre03.g145067 Chlamydomonas reinhardtii HOM05D007414 ORTHO05D009482 1.8e-06 58.2 65 47.7
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 1.8e-06 58.2 343 24.8
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.8e-06 58.2 262 26.7
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.4e-06 57.8 378 24.3
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 2.4e-06 57.8 272 25.7
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 2.4e-06 57.8 448 23.4
Oeu014631.1 Olea europaea HOM05D007414 ORTHO05D009482 2.4e-06 57.8 39 69.2
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 2.4e-06 57.8 262 26.7
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 2.4e-06 57.8 397 23.7
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 3.1e-06 57.4 272 25.7
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.1e-06 57.4 272 26.5
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 3.1e-06 57.4 391 24.0
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 5.3e-06 56.6 281 26.3
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 5.3e-06 56.6 267 24.7
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 5.3e-06 56.6 262 26.3
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 6.9e-06 56.2 274 24.1
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 6.9e-06 56.2 276 26.1
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 6.9e-06 56.2 369 25.5
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 9.1e-06 55.8 275 25.8
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 9.1e-06 55.8 267 27.3


User provided reference genes

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