Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.1e-39 166.0 78 100.0
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 1.6e-36 155.6 78 93.6
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 5.9e-36 153.7 78 91.0
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 2.0e-23 112.1 79 68.4
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 2.0e-15 85.5 79 54.4
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 2.9e-14 81.6 66 56.1
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 1.8e-13 79.0 79 55.7
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 7.0e-13 77.0 80 51.2
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.5e-12 74.7 79 49.4
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 4.6e-12 74.3 79 50.6
Solyc06g065073.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 2.9e-11 71.6 79 46.8
Sopen06g023600 Solanum pennellii HOM05D008200 ORTHO05D010849 2.9e-11 71.6 79 46.8
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 3.9e-11 71.2 79 45.6
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.9e-11 71.2 79 46.8
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 6.6e-11 70.5 75 49.3
PGSC0003DMG400031328 Solanum tuberosum HOM05D008200 ORTHO05D007342 6.6e-11 70.5 79 45.6
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.5e-10 69.3 73 49.3
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 1.9e-10 68.9 78 47.4
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.9e-10 68.9 76 51.3
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 3.3e-10 68.2 84 47.6
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 4.3e-10 67.8 72 50.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 4.3e-10 67.8 72 48.6
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 5.6e-10 67.4 72 48.6
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 7.3e-10 67.0 80 46.2
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.2e-09 66.2 72 48.6
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 1.6e-09 65.9 72 48.6
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.6e-09 65.9 75 48.0
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.8e-09 65.1 72 48.6
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 3.6e-09 64.7 60 46.7
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.7e-09 64.3 72 48.6
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.7e-09 64.3 72 48.6
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 4.7e-09 64.3 76 51.3
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 6.2e-09 63.9 72 50.0
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 8.0e-09 63.5 60 45.0
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 8.0e-09 63.5 51 54.9
Peaxi162Scf00268g00024 Petunia axillaris HOM05D008200 ORTHO05D007342 8.0e-09 63.5 79 41.8
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 1.4e-08 62.8 75 48.0
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.4e-08 62.8 60 45.0
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 1.4e-08 62.8 60 45.0
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.8e-08 62.4 80 45.0
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 2.3e-08 62.0 72 48.6
CAN.G861.42 Capsicum annuum HOM05D008200 ORTHO05D010849 5.2e-08 60.8 52 50.0
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 8.9e-08 60.1 52 51.9
PGSC0003DMG400039762 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.2e-07 59.7 53 50.9
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.5e-07 59.3 81 42.0
PGSC0003DMG400004548 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.5e-07 59.3 60 45.0
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 2.6e-07 58.5 76 48.7
PGSC0003DMG400015289 Solanum tuberosum HOM05D008200 ORTHO05D010849 2.6e-07 58.5 60 43.3
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 2.6e-07 58.5 77 40.3
CAN.G2197.1 Capsicum annuum HOM05D008200 ORTHO05D010849 3.4e-07 58.2 60 40.0
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 3.4e-07 58.2 63 50.8
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 7.5e-07 57.0 81 42.0
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 7.5e-07 57.0 70 42.9
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 7.5e-07 57.0 74 44.6
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 9.8e-07 56.6 74 39.2
Solyc03g020030.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.3e-06 56.2 52 50.0
Solyc03g020040.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.3e-06 56.2 52 50.0
Sopen03g029600 Solanum pennellii HOM05D008200 ORTHO05D010849 1.3e-06 56.2 52 50.0
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.2e-06 55.5 82 42.7
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 2.9e-06 55.1 79 43.0
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 3.7e-06 54.7 69 47.8
Sopen03g029580 Solanum pennellii HOM05D008200 ORTHO05D010849 3.7e-06 54.7 52 46.2
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 4.9e-06 54.3 76 35.5
Nitab4.5_0000363g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 6.4e-06 53.9 52 46.2
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 8.3e-06 53.5 53 50.9


User provided reference genes

Program Settings