Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 1.2e-38 162.9 100 100.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 2.8e-38 161.8 100 99.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 2.8e-38 161.8 100 99.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.4e-37 158.7 100 96.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.4e-37 158.7 100 96.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 6.8e-37 157.1 100 96.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 1.2e-36 156.4 100 78.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 1.0e-32 143.3 100 77.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 5.1e-32 141.0 100 84.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 3.3e-31 138.3 100 76.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 5.6e-31 137.5 100 78.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 5.6e-31 137.5 100 78.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 9.6e-31 136.7 100 77.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 9.6e-31 136.7 100 77.0
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 1.3e-30 136.3 100 67.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 6.2e-30 134.0 100 72.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 8.1e-30 133.7 100 71.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 8.1e-30 133.7 100 78.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 8.1e-30 133.7 100 72.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 1.1e-29 133.3 100 76.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 1.8e-29 132.5 100 64.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 1.8e-29 132.5 100 78.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.8e-29 132.5 100 67.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 1.8e-29 132.5 98 81.6
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 4.0e-29 131.3 100 76.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 4.0e-29 131.3 100 76.0
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 6.9e-29 130.6 100 81.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 6.9e-29 130.6 100 75.0
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 76.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 71.0
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 9.0e-29 130.2 100 76.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 5.8e-28 127.5 100 70.0
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 5.8e-28 127.5 100 77.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 5.8e-28 127.5 100 70.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 7.6e-28 127.1 100 72.0
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.7e-27 125.9 100 80.0
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 1.7e-27 125.9 100 80.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 2.2e-27 125.6 100 78.0
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 2.9e-27 125.2 93 86.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 3.8e-27 124.8 100 66.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 6.4e-27 124.0 100 79.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 6.4e-27 124.0 100 80.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.1e-26 123.2 100 66.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 1.4e-26 122.9 100 65.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 3.2e-26 121.7 100 64.0
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 1.2e-25 119.8 100 76.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 1.2e-25 119.8 91 72.5
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 1.6e-25 119.4 93 61.3
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 1.6e-25 119.4 131 61.8
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 2.1e-25 119.0 100 72.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 2.7e-25 118.6 73 76.7
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 4.6e-25 117.9 100 64.0
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 1.3e-24 116.3 100 68.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 1.3e-24 116.3 72 76.4
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 3.0e-24 115.2 98 74.5
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 3.0e-24 115.2 98 66.3
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 8.7e-24 113.6 69 73.9
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 8.7e-24 113.6 100 60.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 9.6e-23 110.2 100 76.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 1.3e-22 109.8 100 53.0
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.1e-22 109.0 100 74.0
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 2.1e-22 109.0 100 74.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 3.6e-22 108.2 100 53.0
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 1.4e-21 106.3 100 69.0
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 1.8e-21 105.9 100 61.0
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 3.1e-21 105.1 100 64.0
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 3.1e-21 105.1 100 61.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 9.0e-21 103.6 100 74.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 9.0e-21 103.6 100 50.0
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 3.4e-20 101.7 100 61.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 9.9e-20 100.1 101 58.4
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 9.9e-20 100.1 102 62.7
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.7e-19 99.4 102 56.9
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 1.7e-19 99.4 91 60.4
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 2.2e-19 99.0 73 60.3
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 3.8e-19 98.2 72 62.5
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 3.8e-19 98.2 72 62.5
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 3.8e-19 98.2 72 62.5
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 4.9e-19 97.8 102 56.9
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 4.2e-18 94.7 102 54.9
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 5.4e-18 94.4 100 50.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 2.7e-17 92.0 100 52.0
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 7.9e-17 90.5 80 55.0
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 7.9e-17 90.5 100 51.0
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.0e-16 90.1 100 47.0
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 1.0e-16 90.1 100 55.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 8.7e-16 87.0 102 52.9
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 8.7e-16 87.0 102 52.9
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 9.6e-15 83.6 100 44.0
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 9.6e-15 83.6 53 73.6
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.8e-13 79.3 48 75.0
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 1.2e-12 76.6 48 70.8
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 1.2e-12 76.6 48 72.9
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 3.4e-12 75.1 100 49.0
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 7.6e-12 73.9 90 46.7
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 1.0e-11 73.6 100 47.0
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 1.0e-11 73.6 100 47.0
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 1.7e-11 72.8 100 46.0
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 2.9e-11 72.0 64 56.2
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 5.5e-10 67.8 48 60.4
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 1.6e-09 66.2 81 50.6
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 2.7e-09 65.5 58 53.4
DCAR_006239 Daucus carota HOM05D006995 ORTHO05D008870 2.7e-09 65.5 100 50.0
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 2.7e-09 65.5 48 62.5
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 7.9e-09 63.9 61 65.6
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.0e-08 63.5 61 67.2
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 1.8e-08 62.8 46 63.0
TAR629G2225 Trochodendron aralioides HOM05D000001 ORTHO05D414751 1.1e-07 60.1 53 73.6
Mapoly0052s0030 Marchantia polymorpha HOM05D006995 ORTHO05D008870 3.3e-07 58.5 67 38.8


User provided reference genes

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