Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 1.8e-111 406.0 207 100.0
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 3.8e-106 388.3 207 97.6
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 1.8e-103 379.4 207 95.2
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 7.4e-102 374.0 200 95.5
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 1.8e-100 369.4 189 98.9
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 4.9e-98 361.3 186 97.8
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 9.0e-92 340.5 206 88.8
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 1.3e-90 336.7 199 85.9
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 4.6e-88 328.2 204 82.8
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 4.6e-88 328.2 204 82.8
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 7.9e-88 327.4 205 82.0
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.8e-87 326.2 204 82.4
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 1.1e-86 323.6 204 82.8
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 3.3e-86 322.0 205 80.5
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 5.7e-86 321.2 205 82.0
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 7.4e-86 320.9 204 81.9
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 2.8e-85 318.9 204 81.4
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 3.7e-85 318.5 196 82.1
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 6.3e-85 317.8 200 82.0
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 3.1e-84 315.5 205 80.5
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 4.1e-84 315.1 182 86.8
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 9.1e-84 313.9 196 82.7
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 1.2e-83 313.5 197 80.7
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 1.5e-83 313.2 206 79.6
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.5e-83 313.2 206 78.6
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 2.0e-83 312.8 187 85.0
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 2.0e-83 312.8 196 82.7
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 3.4e-83 312.0 195 81.0
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 4.5e-83 311.6 208 78.8
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 5.9e-83 311.2 205 79.5
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 7.7e-83 310.8 204 78.4
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 1.0e-82 310.5 205 80.5
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.0e-82 310.5 200 78.5
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 1.0e-82 310.5 200 78.5
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 1.0e-82 310.5 199 78.4
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 1.3e-82 310.1 187 84.0
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.3e-82 310.1 200 78.5
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.3e-82 310.1 200 78.5
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.3e-82 310.1 200 78.5
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.2e-82 309.3 200 78.5
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 2.9e-82 308.9 196 80.6
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 5.0e-82 308.1 194 80.9
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 5.0e-82 308.1 204 78.9
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 6.5e-82 307.8 204 77.0
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 6.5e-82 307.8 206 77.2
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 6.5e-82 307.8 200 78.0
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 6.5e-82 307.8 201 78.6
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 8.5e-82 307.4 205 78.5
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 1.9e-81 306.2 203 77.3
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 2.5e-81 305.8 192 80.2
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 5.5e-81 304.7 194 79.9
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 5.5e-81 304.7 192 81.2
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 5.5e-81 304.7 201 78.1
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 5.5e-81 304.7 196 80.1
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 9.4e-81 303.9 205 77.6
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 1.2e-80 303.5 194 76.3
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.2e-80 303.5 205 76.1
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 1.6e-80 303.1 205 78.0
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 6.1e-80 301.2 193 77.7
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 1.0e-79 300.4 194 76.8
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 1.8e-79 299.7 202 74.8
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 2.3e-79 299.3 199 77.4
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 2.3e-79 299.3 205 76.1
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 3.0e-79 298.9 193 76.7
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 3.0e-79 298.9 201 75.1
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 6.7e-79 297.7 202 73.3
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 8.8e-79 297.4 204 74.0
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 1.1e-78 297.0 194 75.8
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 1.1e-78 297.0 194 76.3
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 1.1e-78 297.0 197 77.7
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 2.6e-78 295.8 194 76.8
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 3.3e-78 295.4 204 73.0
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 4.4e-78 295.0 194 75.3
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 4.4e-78 295.0 209 73.7
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 4.4e-78 295.0 193 78.2
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 4.4e-78 295.0 194 75.8
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 9.7e-78 293.9 194 75.3
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 9.7e-78 293.9 194 75.3
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 9.7e-78 293.9 194 75.3
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 1.3e-77 293.5 195 74.9
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.7e-77 293.1 221 70.6
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.8e-77 292.4 188 79.3
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 6.3e-77 291.2 191 78.0
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 1.4e-76 290.0 203 73.4
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.8e-76 289.7 197 75.6
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 1.8e-76 289.7 186 80.6
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 3.4e-75 285.4 225 68.9
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 4.5e-75 285.0 197 74.1
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 5.0e-74 281.6 202 69.8
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 8.5e-74 280.8 205 70.7
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 1.1e-73 280.4 230 67.4
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.2e-72 276.9 205 74.1
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 2.1e-72 276.2 205 70.7
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 1.8e-71 273.1 164 82.3
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 2.3e-71 272.7 195 69.2
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 1.5e-70 270.0 316 52.2
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 5.3e-68 261.5 239 59.4
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 2.9e-66 255.8 164 78.7
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 5.5e-65 251.5 161 78.3
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 3.7e-61 238.8 153 77.8
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 3.7e-61 238.8 197 64.5
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 9.8e-54 214.2 132 83.3
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 3.7e-53 212.2 116 93.1
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 5.9e-51 204.9 133 75.9
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-49 199.9 118 83.9
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 5.5e-49 198.4 106 90.6
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 5.5e-49 198.4 127 78.0
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 9.5e-49 197.6 132 75.8
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 3.0e-47 192.6 118 79.7
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 3.0e-47 192.6 151 64.9
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 1.4e-44 183.7 108 84.3
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 8.0e-40 167.9 186 54.3
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 4.4e-38 162.2 146 60.3
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 7.3e-33 144.8 192 43.8
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 1.2e-32 144.1 175 43.4
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 1.9e-28 130.2 91 71.4
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 3.3e-25 119.4 133 49.6
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 7.3e-25 118.2 138 44.9
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 2.3e-23 113.2 210 40.0
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 2.3e-23 113.2 218 35.3
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 2.2e-21 106.7 227 32.6
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 3.0e-10 69.7 165 30.3
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 1.2e-08 64.3 71 43.7
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 1.1e-07 61.2 36 75.0
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-07 60.8 41 70.7
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 1.8e-07 60.5 40 65.0
TAR371G0726 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.2e-06 57.8 33 84.8


User provided reference genes

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