Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 5.0e-72 274.6 170 100.0
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 3.6e-62 241.9 177 91.0
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 1.4e-61 240.0 177 90.4
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 1.7e-59 233.0 175 88.0
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.7e-48 196.4 176 81.2
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 4.7e-46 188.3 176 80.1
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 3.7e-35 152.1 176 72.7
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 1.8e-29 133.3 180 62.2
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 1.1e-26 124.0 174 56.3
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 4.1e-26 122.1 173 57.8
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 1.6e-25 120.2 175 62.3
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 1.6e-25 120.2 176 57.4
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 6.0e-25 118.2 178 60.7
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 1.0e-24 117.5 179 60.3
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 1.7e-24 116.7 176 57.4
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 1.7e-24 116.7 176 57.4
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.7e-24 116.7 171 54.4
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 2.3e-24 116.3 176 60.8
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 3.9e-24 115.5 168 61.9
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 6.6e-24 114.8 181 60.8
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 6.6e-24 114.8 178 51.7
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 1.5e-23 113.6 179 56.4
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.3e-23 112.5 177 54.8
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 7.3e-23 111.3 178 56.7
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 9.6e-23 110.9 179 59.8
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 9.6e-23 110.9 179 45.3
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 6.2e-22 108.2 182 58.2
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 6.2e-22 108.2 174 55.7
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 8.1e-22 107.8 177 55.9
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 8.1e-22 107.8 176 58.0
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.4e-21 107.1 172 59.9
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.8e-21 106.7 144 47.9
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.8e-21 106.7 163 58.9
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 2.4e-21 106.3 177 52.5
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.1e-21 105.9 174 58.0
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 3.1e-21 105.9 184 56.0
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 3.1e-21 105.9 172 52.3
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 5.2e-21 105.1 144 68.8
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 5.2e-21 105.1 182 50.0
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 5.2e-21 105.1 132 67.4
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 6.9e-21 104.8 173 44.5
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 6.9e-21 104.8 167 57.5
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 8.9e-21 104.4 179 49.2
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.5e-20 103.6 132 69.7
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 2.6e-20 102.8 172 57.0
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 3.4e-20 102.4 157 43.3
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 3.4e-20 102.4 133 69.2
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 4.4e-20 102.1 180 57.8
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 4.4e-20 102.1 174 58.0
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 5.8e-20 101.7 178 59.0
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 7.6e-20 101.3 174 56.9
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.7e-19 100.1 168 44.0
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.7e-19 100.1 149 61.1
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 1.7e-19 100.1 176 58.5
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 3.8e-19 99.0 174 58.6
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.8e-19 99.0 151 41.1
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.8e-19 99.0 177 57.1
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.8e-19 99.0 177 57.1
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.8e-19 99.0 151 41.1
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 4.9e-19 98.6 180 53.9
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 6.4e-19 98.2 178 58.4
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.4e-19 98.2 174 59.2
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 1.1e-18 97.4 171 51.5
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.4e-18 96.3 177 56.5
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 3.2e-18 95.9 175 56.6
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.2e-18 95.9 134 47.8
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 3.2e-18 95.9 176 48.9
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 4.2e-18 95.5 178 48.3
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 4.2e-18 95.5 171 57.9
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 1.2e-17 94.0 132 67.4
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.2e-17 94.0 176 53.4
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 4.6e-17 92.0 122 52.5
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 4.6e-17 92.0 124 52.4
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 4.6e-17 92.0 138 58.7
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 6.0e-17 91.7 132 65.9
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 6.0e-17 91.7 171 57.9
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 7.8e-17 91.3 132 65.2
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 1.0e-16 90.9 166 58.4
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.0e-16 90.9 166 48.2
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.7e-16 90.1 88 54.5
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.7e-16 90.1 88 54.5
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 1.7e-16 90.1 178 57.3
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 1.7e-16 90.1 171 52.0
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 2.3e-16 89.7 136 59.6
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 3.9e-16 89.0 90 52.2
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.9e-16 89.0 177 39.0
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 3.9e-16 89.0 139 59.7
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 5.1e-16 88.6 175 49.1
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 5.1e-16 88.6 113 44.2
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 5.1e-16 88.6 164 56.1
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 5.1e-16 88.6 166 50.0
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 6.6e-16 88.2 88 53.4
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 6.6e-16 88.2 88 53.4
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 6.6e-16 88.2 88 53.4
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 6.6e-16 88.2 88 53.4
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.6e-16 88.2 177 45.2
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 8.7e-16 87.8 130 42.3
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 8.7e-16 87.8 177 38.4
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 1.5e-15 87.0 86 87.2
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 1.9e-15 86.7 88 52.3
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 2.5e-15 86.3 133 66.2
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.5e-15 86.3 131 42.7
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 3.3e-15 85.9 114 43.0
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 3.3e-15 85.9 172 37.8
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 3.3e-15 85.9 172 37.8
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 4.3e-15 85.5 169 57.4
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 5.6e-15 85.1 88 54.5
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 7.3e-15 84.7 177 37.9
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 7.3e-15 84.7 168 57.7
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 7.3e-15 84.7 132 65.2
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 9.6e-15 84.3 169 57.4
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 1.3e-14 84.0 86 51.2
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 1.6e-14 83.6 135 44.4
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 2.1e-14 83.2 172 36.6
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 2.1e-14 83.2 169 43.8
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.8e-14 82.8 165 53.3
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 4.8e-14 82.0 175 53.7
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 8.1e-14 81.3 164 37.8
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 1.1e-13 80.9 175 55.4
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.0e-13 79.0 134 44.0
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 1.5e-12 77.0 172 52.3
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 1.5e-12 77.0 175 37.1
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 2.0e-12 76.6 172 38.4
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 3.4e-12 75.9 89 51.7
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.7e-11 73.6 131 42.0
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 2.2e-11 73.2 169 47.9
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.9e-11 72.8 141 40.4
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 4.9e-11 72.0 138 38.4
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 4.2e-10 68.9 167 32.9
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 9.3e-10 67.8 120 43.3
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 2.1e-09 66.6 125 52.0
SEGI_18714 Sequoiadendron giganteum HOM05D005335 ORTHO05D006472 1.8e-08 63.5 91 68.1
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 6.7e-08 61.6 181 47.5
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.5e-07 59.7 87 69.0
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 7.4e-07 58.2 172 48.8
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 7.4e-07 58.2 141 49.6
Lj9P479T20 Lonicera japonica HOM05D005335 ORTHO05D006472 2.1e-06 56.6 69 85.5


User provided reference genes

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