Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.2e-167 593.2 311 100.0
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 4.7e-153 544.7 305 95.1
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 1.6e-137 493.0 283 93.3
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 7.1e-133 477.6 284 89.4
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 7.9e-124 447.6 283 84.8
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 4.2e-101 372.1 207 94.7
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 5.3e-96 355.1 283 69.3
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 4.2e-93 345.5 284 68.3
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 7.2e-93 344.7 283 66.4
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 2.1e-92 343.2 300 65.0
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.1e-92 343.2 285 66.3
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 3.6e-92 342.4 285 68.1
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 4.7e-92 342.0 287 67.6
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 6.1e-92 341.7 285 68.1
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 6.1e-92 341.7 285 68.1
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 6.1e-92 341.7 283 65.4
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 6.1e-92 341.7 288 67.4
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 2.3e-91 339.7 282 68.4
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 3.9e-91 339.0 285 68.4
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 5.2e-91 338.6 291 66.7
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.0e-90 336.7 245 73.1
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 3.3e-90 335.9 292 64.7
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 4.4e-90 335.5 282 65.6
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 4.4e-90 335.5 286 67.8
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 9.7e-90 334.3 283 66.4
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 9.7e-90 334.3 281 68.3
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 1.7e-89 333.6 282 66.7
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.2e-89 333.2 282 66.7
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 3.7e-89 332.4 282 66.7
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 8.2e-89 331.3 323 60.7
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 8.2e-89 331.3 294 64.6
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 8.2e-89 331.3 288 66.7
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 1.1e-88 330.9 282 66.0
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 1.4e-88 330.5 282 66.0
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.4e-88 330.5 295 63.7
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 1.4e-88 330.5 287 64.8
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 1.4e-88 330.5 284 66.5
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.4e-88 329.7 282 66.3
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.4e-88 329.7 282 66.3
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 2.4e-88 329.7 283 65.4
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 5.3e-88 328.6 282 65.2
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 5.3e-88 328.6 282 66.3
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 9.1e-88 327.8 278 65.1
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.2e-87 327.4 283 63.6
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 2.0e-87 326.6 280 66.4
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 2.0e-87 326.6 288 64.9
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 2.6e-87 326.2 282 62.8
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 4.5e-87 325.5 288 64.2
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 5.9e-87 325.1 289 65.7
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 5.9e-87 325.1 286 65.0
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 7.7e-87 324.7 284 64.1
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 7.7e-87 324.7 284 64.4
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 7.7e-87 324.7 282 65.2
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 1.0e-86 324.3 286 64.3
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.3e-86 323.9 282 65.2
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.3e-86 323.9 282 65.2
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 2.2e-86 323.2 297 63.3
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.2e-86 323.2 282 64.9
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.2e-86 323.2 282 63.1
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 2.9e-86 322.8 237 71.3
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 5.0e-86 322.0 287 63.1
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 5.0e-86 322.0 289 61.9
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 1.9e-85 320.1 279 66.7
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 1.9e-85 320.1 286 65.0
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 2.5e-85 319.7 286 62.9
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 2.5e-85 319.7 288 63.9
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 3.2e-85 319.3 258 67.4
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 5.5e-85 318.5 288 64.6
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 5.5e-85 318.5 288 64.2
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 7.2e-85 318.2 288 63.5
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 7.2e-85 318.2 283 63.6
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.1e-84 316.6 242 69.0
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 2.1e-84 316.6 283 65.0
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 2.7e-84 316.2 221 73.8
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 6.1e-84 315.1 302 62.3
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 8.0e-84 314.7 293 62.8
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 1.8e-83 313.5 302 62.3
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 1.8e-83 313.5 282 63.5
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 1.8e-83 313.5 282 63.5
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 1.8e-83 313.5 289 64.0
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.5e-82 310.5 287 61.7
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.0e-82 310.1 289 61.9
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 3.4e-82 309.3 209 75.1
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 4.4e-82 308.9 208 77.4
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 5.7e-82 308.5 300 59.7
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 7.5e-82 308.1 275 63.6
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 2.2e-81 306.6 286 59.8
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 8.3e-81 304.7 281 59.8
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.4e-80 303.9 284 61.3
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 2.0e-79 300.1 285 59.3
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 3.5e-79 299.3 288 61.8
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 1.7e-78 297.0 202 75.2
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 2.9e-78 296.2 285 63.2
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 6.5e-78 295.0 280 60.7
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 8.5e-78 294.7 286 59.4
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 7.2e-77 291.6 323 54.5
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.6e-76 290.4 297 61.3
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.1e-76 290.0 258 61.6
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 2.1e-76 290.0 284 58.5
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 6.1e-76 288.5 238 64.3
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 5.2e-75 285.4 238 63.4
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 5.2e-75 285.4 208 74.0
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 6.8e-75 285.0 286 57.3
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 1.5e-74 283.9 234 62.8
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 2.0e-74 283.5 236 62.3
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 3.4e-74 282.7 273 62.3
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 4.4e-74 282.3 283 57.2
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 7.5e-74 281.6 238 62.6
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.8e-73 279.6 262 61.1
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 2.8e-73 279.6 238 65.5
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 2.8e-73 279.6 222 63.1
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 3.7e-73 279.3 230 63.9
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 4.9e-73 278.9 229 65.1
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 4.9e-73 278.9 229 65.1
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 6.3e-73 278.5 226 66.8
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 1.4e-72 277.3 285 57.2
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 1.4e-72 277.3 218 67.0
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 2.4e-72 276.6 229 64.6
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 4.1e-72 275.8 218 66.5
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 4.1e-72 275.8 218 66.5
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 5.4e-72 275.4 207 69.1
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 2.0e-71 273.5 205 69.8
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 4.5e-71 272.3 224 61.6
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 7.7e-71 271.6 257 60.3
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.9e-70 269.6 268 61.9
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 2.8e-68 263.1 237 60.8
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 1.5e-66 257.3 195 64.1
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 5.4e-64 248.8 220 60.0
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 9.2e-64 248.1 226 57.1
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 8.6e-62 241.5 163 76.1
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 2.3e-59 233.4 234 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 1.5e-58 230.7 231 53.7
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 1.7e-57 227.3 219 55.7
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 3.2e-56 223.0 220 55.0
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 1.2e-55 221.1 181 65.2
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.7e-54 217.2 159 70.4
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 2.3e-46 190.3 222 44.1
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 8.6e-46 188.3 226 46.5
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.8e-43 180.6 131 71.8
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.7e-41 174.1 157 61.8
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 2.2e-41 173.7 180 57.8
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 6.6e-38 162.2 112 73.2
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.6e-36 157.5 113 72.6
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 1.5e-34 151.0 117 64.1
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.9e-33 146.7 110 70.0
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 2.4e-27 127.1 279 34.1
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.0e-26 124.0 123 61.8
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.9e-25 120.2 155 49.0
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 1.1e-24 118.2 134 53.0
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 9.0e-19 98.6 246 30.5
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 7.4e-13 79.0 66 63.6
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 2.6e-10 70.5 60 61.7
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 2.2e-09 67.4 175 33.1
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 2.5e-08 63.9 64 53.1
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 4.2e-08 63.2 194 29.4
Dinv09272 Davidia involucrata HOM05D004634 ORTHO05D005502 5.5e-08 62.8 54 59.3
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 7.1e-08 62.4 191 27.7
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 1.6e-07 61.2 208 24.5
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 1.6e-07 61.2 194 28.4
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 2.1e-07 60.8 190 26.3
Mapoly0125s0036 Marchantia polymorpha HOM05D000764 ORTHO05D002819 2.7e-07 60.5 203 25.1
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 2.7e-07 60.5 191 26.2
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 6.0e-07 59.3 179 25.7
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 7.9e-07 58.9 191 27.2
Os08g0416900 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D002819 7.9e-07 58.9 247 23.9
AagrBONN_evm.TU.Sc2ySwM_344.935 Anthoceros agrestis HOM05D000764 ORTHO05D002819 1.0e-06 58.5 191 25.1
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 1.3e-06 58.2 179 25.1
CAN.G982.7 Capsicum annuum HOM05D000764 ORTHO05D002819 1.8e-06 57.8 196 25.5
CDE02G0712 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 1.8e-06 57.8 200 25.5
Lalb_Chr13g0302551 Lupinus albus HOM05D000764 ORTHO05D002819 3.0e-06 57.0 236 25.8
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 3.9e-06 56.6 191 25.1
FAN13G0269 Fragaria x ananassa HOM05D000764 ORTHO05D002006 3.9e-06 56.6 179 27.9
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 3.9e-06 56.6 174 27.0
MD06G1208500 Malus domestica HOM05D000764 ORTHO05D002819 5.1e-06 56.2 243 25.5
FvH4_5g12961 Fragaria vesca HOM05D000764 ORTHO05D002819 6.7e-06 55.8 179 27.9
FAN18G3783 Fragaria x ananassa HOM05D000764 ORTHO05D002006 6.7e-06 55.8 179 27.9
Manes.01G022900 Manihot esculenta HOM05D000764 ORTHO05D002819 6.7e-06 55.8 179 27.4
Phvul.003G180200 Phaseolus vulgaris HOM05D000764 ORTHO05D002819 6.7e-06 55.8 181 27.6
RcHm_v2.0_Chr7g0184201 Rosa chinensis HOM05D000764 ORTHO05D002819 6.7e-06 55.8 217 25.8
Cfa019861 Carpinus fangiana HOM05D000764 ORTHO05D002819 8.7e-06 55.5 226 25.7
Lj9A434G78 Lonicera japonica HOM05D000764 ORTHO05D002819 8.7e-06 55.5 190 25.3
Pp3c15_20170 Physcomitrium patens HOM05D000764 ORTHO05D002819 8.7e-06 55.5 178 27.5


User provided reference genes

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