Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.4e-46 189.1 89 100.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.4e-38 162.5 91 89.0
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.3e-34 149.4 86 81.4
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.2e-32 142.9 84 81.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.5e-32 141.0 88 75.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.1e-29 132.1 82 68.3
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.6e-29 131.3 88 65.9
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 6.1e-29 130.6 87 67.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.0e-28 129.8 82 68.3
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.0e-28 129.8 90 66.7
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 3.0e-28 128.3 91 64.8
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 3.0e-28 128.3 88 67.0
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 4.0e-28 127.9 89 66.3
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 4.0e-28 127.9 87 65.5
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 4.0e-28 127.9 82 67.1
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 5.2e-28 127.5 89 65.2
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 6.7e-28 127.1 87 65.5
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 6.7e-28 127.1 90 64.4
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.2e-27 126.3 91 63.7
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 1.2e-27 126.3 91 63.7
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.5e-27 125.9 87 65.5
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.6e-27 125.2 87 65.5
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 4.4e-27 124.4 84 64.3
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 5.7e-27 124.0 91 63.7
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 5.7e-27 124.0 89 64.0
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 7.5e-27 123.6 83 66.3
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 7.5e-27 123.6 89 61.8
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 7.5e-27 123.6 88 65.9
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 7.5e-27 123.6 82 65.9
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 9.7e-27 123.2 87 63.2
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 9.7e-27 123.2 87 63.2
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 9.7e-27 123.2 87 63.2
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.3e-26 122.9 87 64.4
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 2.8e-26 121.7 87 64.4
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 2.8e-26 121.7 85 64.7
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.7e-26 121.3 84 64.3
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.7e-26 121.3 87 64.4
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.7e-26 121.3 87 60.9
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 6.3e-26 120.6 82 68.3
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 6.3e-26 120.6 89 66.3
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 8.3e-26 120.2 92 62.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.1e-25 119.8 92 62.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.1e-25 119.8 91 63.7
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.1e-25 119.8 91 65.9
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.1e-25 119.8 88 62.5
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.4e-25 119.4 65 76.9
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-25 119.4 82 64.6
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.4e-25 119.4 82 62.2
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 2.4e-25 118.6 82 62.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 2.4e-25 118.6 82 63.4
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 2.4e-25 118.6 91 62.6
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 2.4e-25 118.6 89 62.9
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 3.1e-25 118.2 89 64.0
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 4.1e-25 117.9 90 61.1
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.1e-25 117.9 82 62.2
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 4.1e-25 117.9 89 60.7
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 4.1e-25 117.9 84 64.3
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 5.3e-25 117.5 91 59.3
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 5.3e-25 117.5 90 63.3
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 7.0e-25 117.1 82 64.6
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.0e-25 117.1 82 61.0
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 7.0e-25 117.1 82 63.4
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 9.1e-25 116.7 82 62.2
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.2e-24 116.3 82 59.8
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.2e-24 116.3 82 63.4
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.2e-24 116.3 82 63.4
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 1.6e-24 115.9 83 62.7
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.6e-24 115.9 88 61.4
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.0e-24 115.5 82 59.8
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.0e-24 115.5 86 66.3
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 2.7e-24 115.2 82 63.4
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.7e-24 115.2 87 63.2
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.7e-24 115.2 90 63.3
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 3.5e-24 114.8 89 60.7
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 3.5e-24 114.8 91 64.8
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 4.5e-24 114.4 82 62.2
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.0e-23 113.2 89 58.4
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.3e-23 112.8 83 59.0
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.3e-23 112.8 90 58.9
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.7e-23 112.5 84 59.5
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.7e-23 112.5 91 63.7
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.7e-23 112.5 89 61.8
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.7e-23 112.5 91 62.6
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 2.2e-23 112.1 82 62.2
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.2e-23 112.1 84 59.5
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.2e-23 112.1 84 59.5
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.2e-23 112.1 82 61.0
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.9e-23 111.7 82 63.4
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 2.9e-23 111.7 92 60.9
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 2.9e-23 111.7 89 59.6
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 3.8e-23 111.3 90 57.8
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 3.8e-23 111.3 84 59.5
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 3.8e-23 111.3 84 59.5
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 3.8e-23 111.3 91 57.1
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.8e-23 111.3 89 60.7
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 3.8e-23 111.3 88 60.2
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 5.0e-23 110.9 82 62.2
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 6.5e-23 110.5 92 59.8
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 6.5e-23 110.5 89 59.6
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 6.5e-23 110.5 92 60.9
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 8.5e-23 110.2 84 58.3
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 8.5e-23 110.2 88 62.5
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.1e-22 109.8 90 57.8
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.1e-22 109.8 90 57.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-22 109.8 92 58.7
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.1e-22 109.8 82 58.5
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.5e-22 109.4 90 61.1
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.5e-22 109.4 92 57.6
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.5e-22 109.4 82 61.0
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.9e-22 109.0 82 62.2
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 2.5e-22 108.6 82 61.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.5e-22 108.6 90 60.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 2.5e-22 108.6 84 57.1
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.2e-22 108.2 88 59.1
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.2e-22 108.2 90 61.1
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 3.2e-22 108.2 90 61.1
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 4.2e-22 107.8 89 56.2
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 7.2e-22 107.1 82 56.1
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 9.4e-22 106.7 82 61.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.1e-21 105.5 74 70.3
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 4.7e-21 104.4 86 58.1
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 4.0e-20 101.3 64 68.8
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 5.2e-20 100.9 50 80.0
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 4.4e-19 97.8 82 56.1
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 5.7e-19 97.4 110 48.2
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 5.7e-19 97.4 82 54.9
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 2.2e-18 95.5 82 53.7
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 4.8e-18 94.4 63 65.1
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 6.3e-18 94.0 50 78.0
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.2e-16 89.7 72 58.3
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.0e-16 89.0 74 59.5
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 1.0e-15 86.7 75 56.0
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 5.0e-15 84.3 67 58.2
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 5.0e-15 84.3 75 56.0
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 9.5e-14 80.1 69 53.6
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.2e-13 79.7 75 58.7
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 1.8e-12 75.9 64 51.6
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.8e-12 75.9 75 56.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 2.3e-12 75.5 67 55.2
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 5.7e-11 70.9 86 41.9
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.2e-10 68.9 88 42.0
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.8e-09 65.9 35 77.1
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.2e-08 63.2 71 45.1
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 1.6e-08 62.8 85 44.7
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.0e-07 60.1 64 43.8
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 2.9e-07 58.5 42 59.5
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 3.9e-07 58.2 70 40.0


User provided reference genes

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