Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.8e-112 408.3 280 100.0
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.6e-86 322.8 280 82.1
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 3.2e-84 315.8 279 80.6
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.2e-41 174.5 283 43.1
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.7e-30 136.7 282 37.2
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 6.8e-26 122.1 319 33.9
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.5e-25 120.9 322 33.2
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 3.4e-25 119.8 322 32.9
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.1e-23 114.8 327 33.0
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.1e-23 112.8 325 32.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 6.2e-19 99.0 301 30.2
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 1.4e-18 97.8 301 29.9
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.8e-18 97.4 289 32.9
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.1e-18 96.7 298 30.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 8.9e-18 95.1 293 30.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-17 94.7 288 29.9
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.0e-17 94.0 285 29.5
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 2.6e-17 93.6 298 30.2
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 3.4e-17 93.2 301 30.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 3.4e-17 93.2 301 30.9
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 4.4e-17 92.8 87 59.8
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 5.8e-17 92.4 87 57.5
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 9.9e-17 91.7 103 55.3
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 9.9e-17 91.7 103 55.3
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.2e-16 90.5 103 54.4
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 2.2e-16 90.5 290 29.7
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.9e-16 90.1 288 30.6
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 3.8e-16 89.7 291 29.6
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 3.8e-16 89.7 290 30.3
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.8e-16 89.7 100 50.0
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 3.8e-16 89.7 111 45.9
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.9e-16 89.4 103 54.4
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 6.4e-16 89.0 289 32.2
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 6.4e-16 89.0 292 30.8
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.1e-15 88.2 101 46.5
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-15 88.2 118 44.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-15 88.2 118 44.1
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-15 88.2 289 29.1
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.4e-15 87.8 119 43.7
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.4e-15 87.8 103 48.5
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.4e-15 87.8 108 47.2
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.4e-15 87.0 315 27.3
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.2e-15 86.7 290 30.0
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.2e-15 86.7 290 30.0
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 4.2e-15 86.3 106 43.4
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.4e-15 85.9 107 45.8
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.4e-15 85.9 103 53.4
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.1e-15 85.5 293 29.0
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 7.1e-15 85.5 285 37.5
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 9.3e-15 85.1 118 45.8
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.3e-15 85.1 293 29.4
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 9.3e-15 85.1 127 44.1
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 9.3e-15 85.1 132 39.4
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.2e-14 84.7 105 47.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 1.2e-14 84.7 99 47.5
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.6e-14 84.3 113 45.1
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.1e-14 84.0 312 29.5
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.7e-14 83.6 129 40.3
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.5e-14 83.2 128 41.4
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 3.5e-14 83.2 93 48.4
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.5e-14 83.2 111 45.9
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 6.0e-14 82.4 280 27.1
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 6.0e-14 82.4 305 28.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 7.8e-14 82.0 101 47.5
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 7.8e-14 82.0 103 46.6
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 7.8e-14 82.0 103 46.6
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-13 81.6 301 27.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.0e-13 81.6 103 42.7
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.0e-13 81.6 93 47.3
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.3e-13 81.3 289 30.4
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.3e-13 81.3 153 40.5
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.3e-13 81.3 104 44.2
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.7e-13 80.9 123 43.1
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.9e-13 79.7 123 40.7
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.9e-13 79.7 123 40.7
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 6.6e-13 79.0 115 42.6
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 6.6e-13 79.0 98 46.9
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 8.7e-13 78.6 106 43.4
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.9e-12 77.4 304 26.3
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.5e-12 77.0 138 39.9
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.3e-12 76.6 119 41.2
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 4.3e-12 76.3 104 43.3
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.3e-12 76.3 98 46.9
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 5.6e-12 75.9 254 28.7
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.3e-12 75.5 113 41.6
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.6e-12 75.1 101 41.6
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 9.6e-12 75.1 128 41.4
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.3e-11 74.7 106 44.3
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.6e-11 74.3 97 46.4
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 1.6e-11 74.3 117 40.2
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 2.8e-11 73.6 108 46.3
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 4.8e-11 72.8 131 38.9
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.8e-11 72.8 100 46.0
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 8.1e-11 72.0 308 25.6
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.2e-09 68.2 322 25.2
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.2e-09 68.2 107 40.2
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.6e-09 67.0 108 41.7
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.4e-09 66.2 44 70.5
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.3e-08 64.7 116 37.9
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.7e-08 64.3 102 36.3
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.8e-08 63.2 123 33.3
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 4.9e-08 62.8 108 38.9
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 4.9e-08 62.8 270 26.7
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.1e-07 61.6 59 55.9
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.9e-07 60.8 57 52.6
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 5.4e-07 59.3 106 34.9
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 9.3e-07 58.5 44 59.1
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.6e-06 57.8 128 36.7
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.7e-06 57.0 41 65.9
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 4.6e-06 56.2 110 36.4
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.6e-06 56.2 89 42.7
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.0e-06 55.8 48 50.0
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 7.9e-06 55.5 48 54.2


User provided reference genes

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