Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 8.7e-123 443.7 237 100.0
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 3.3e-114 415.2 237 94.9
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 5.5e-109 397.9 237 92.0
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 5.9e-87 324.7 238 76.9
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 2.2e-70 269.6 245 62.9
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 8.0e-68 261.2 243 62.1
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 6.8e-67 258.1 249 63.5
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 6.8e-67 258.1 245 60.4
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 1.2e-66 257.3 243 61.7
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.3e-65 253.8 245 59.6
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 8.3e-65 251.1 207 67.1
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 4.1e-64 248.8 248 58.5
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 7.0e-64 248.1 245 58.8
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 7.0e-64 248.1 249 60.6
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 3.5e-63 245.7 251 63.3
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 5.0e-62 241.9 249 60.6
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 1.1e-61 240.7 250 58.8
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 1.1e-61 240.7 252 57.1
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.7e-60 236.1 251 58.6
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 3.6e-60 235.7 251 54.6
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 4.7e-60 235.3 195 67.2
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 4.7e-60 235.3 196 65.8
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 1.8e-59 233.4 242 62.0
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 1.8e-59 233.4 243 58.0
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 3.0e-59 232.6 246 55.7
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 4.0e-59 232.3 248 59.7
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 5.2e-59 231.9 219 61.6
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 5.2e-59 231.9 195 64.6
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 5.2e-59 231.9 253 59.3
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 8.8e-59 231.1 259 57.9
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 1.2e-58 230.7 251 60.2
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 2.6e-58 229.6 250 55.2
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 2.6e-58 229.6 249 60.2
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 3.4e-58 229.2 248 54.0
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 7.5e-58 228.0 245 60.4
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 9.8e-58 227.6 251 55.8
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 9.8e-58 227.6 170 77.6
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 9.8e-58 227.6 204 61.3
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 9.8e-58 227.6 212 63.7
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.3e-57 227.3 250 53.2
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 2.2e-57 226.5 194 61.9
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.8e-57 226.1 255 54.9
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 4.8e-57 225.3 198 63.6
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 4.8e-57 225.3 198 63.6
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 4.8e-57 225.3 244 58.2
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 6.3e-57 224.9 256 55.5
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 8.3e-57 224.6 195 64.6
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 8.3e-57 224.6 290 53.1
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.1e-56 224.2 196 63.8
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 1.1e-56 224.2 192 62.0
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.4e-56 223.8 259 52.1
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 1.8e-56 223.4 246 55.7
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 2.4e-56 223.0 191 62.8
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 4.1e-56 222.2 250 58.8
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 5.4e-56 221.9 251 55.0
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 9.1e-56 221.1 252 54.4
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 9.1e-56 221.1 252 54.4
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 1.2e-55 220.7 252 56.0
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.6e-55 220.3 259 56.8
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 4.5e-55 218.8 249 52.2
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 7.7e-55 218.0 203 60.1
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 1.0e-54 217.6 274 50.7
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 1.7e-54 216.9 257 54.9
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.7e-54 216.9 191 62.3
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 3.8e-54 215.7 218 56.9
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 8.6e-54 214.5 241 57.7
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 8.6e-54 214.5 218 58.3
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 2.5e-53 213.0 259 51.0
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 4.2e-53 212.2 191 61.3
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 7.2e-53 211.5 218 58.7
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 8.0e-52 208.0 176 65.3
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 8.0e-52 208.0 182 61.0
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 1.2e-50 204.1 246 54.1
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.5e-50 203.8 244 49.2
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 5.7e-50 201.8 246 52.4
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 1.3e-49 200.7 242 48.8
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 4.9e-49 198.7 241 50.2
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 4.9e-49 198.7 243 49.4
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 8.3e-49 198.0 253 51.0
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 2.4e-48 196.4 259 49.4
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 4.1e-48 195.7 243 48.6
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 5.4e-48 195.3 241 48.1
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 7.0e-48 194.9 242 49.2
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.2e-47 194.1 245 54.3
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 3.5e-47 192.6 195 54.4
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 3.5e-47 192.6 189 58.7
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 4.5e-47 192.2 149 77.2
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.0e-46 191.0 245 53.5
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 5.0e-46 188.7 189 53.4
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 5.0e-46 188.7 195 53.3
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 8.6e-46 188.0 245 46.9
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 1.1e-45 187.6 195 52.8
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 3.3e-45 186.0 195 52.3
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 3.3e-45 186.0 252 47.2
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 4.3e-45 185.7 195 52.3
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.3e-45 185.7 201 56.7
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 1.6e-44 183.7 245 49.4
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 6.1e-44 181.8 277 49.5
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 2.3e-43 179.9 188 52.1
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 2.3e-43 179.9 188 52.1
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 4.0e-43 179.1 190 53.2
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 8.9e-43 177.9 138 68.8
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 1.2e-42 177.6 193 51.3
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 1.2e-42 177.6 137 69.3
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 1.5e-42 177.2 193 51.3
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 3.4e-42 176.0 258 45.3
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 3.4e-42 176.0 138 68.1
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 5.8e-42 175.3 138 67.4
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 5.8e-42 175.3 199 52.8
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 7.5e-42 174.9 193 50.8
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 2.9e-41 172.9 194 53.1
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 3.2e-40 169.5 218 49.5
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.7e-38 163.7 191 49.2
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 5.0e-38 162.2 135 65.9
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 4.4e-34 149.1 258 39.5
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.8e-34 148.7 121 65.3
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 1.3e-33 147.5 237 42.2
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 4.9e-33 145.6 253 39.9
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 1.3e-30 137.5 227 42.3
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 6.6e-30 135.2 190 49.5
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 8.6e-30 134.8 140 59.3
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 3.6e-20 102.8 73 65.8
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 6.2e-20 102.1 74 70.3
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 3.4e-18 96.3 175 41.7
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 2.1e-15 87.0 173 39.3
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 4.6e-15 85.9 224 34.4
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 1.1e-13 81.3 127 44.9
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.3e-13 79.3 107 43.9
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 3.4e-10 69.7 241 34.4
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 2.4e-08 63.5 101 39.6
Cre12.g509300 Chlamydomonas reinhardtii HOM05D005104 ORTHO05D006614 1.2e-07 61.2 217 30.0
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 4.6e-07 59.3 85 45.9
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 6.6e-06 55.5 70 45.7


User provided reference genes

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