Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.6e-310 1068.5 518 100.0
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 1.2e-278 962.6 518 90.3
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 1.3e-277 959.1 518 90.2
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.2e-257 892.9 518 84.0
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 3.4e-249 864.8 528 80.7
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.3e-248 862.8 528 80.9
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 7.0e-242 840.5 531 75.7
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 2.0e-241 839.0 531 75.5
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 1.6e-238 829.3 525 76.4
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.5e-236 822.8 521 76.6
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 3.7e-235 818.1 523 76.1
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 4.8e-235 817.8 527 75.1
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 2.7e-233 812.0 523 75.5
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 7.7e-233 810.4 574 70.2
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 2.9e-232 808.5 520 74.8
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.8e-232 808.1 520 74.8
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 5.0e-232 807.7 518 74.9
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 8.5e-232 807.0 523 75.1
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.9e-231 805.8 522 73.9
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.2e-231 805.1 520 74.6
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.2e-231 805.1 523 74.2
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 5.5e-231 804.3 520 74.4
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 7.2e-231 803.9 518 73.7
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.2e-230 803.1 520 74.4
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.6e-230 802.7 519 74.2
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.1e-230 802.4 520 74.4
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 8.0e-230 800.4 518 75.1
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.8e-229 799.3 520 74.6
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.8e-229 799.3 520 74.2
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.8e-229 799.3 521 74.3
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 2.3e-229 798.9 519 74.2
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 3.0e-229 798.5 523 73.8
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.8e-229 797.0 520 74.0
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 1.5e-228 796.2 519 73.0
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.6e-228 795.4 521 75.0
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 5.7e-228 794.3 518 74.1
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 9.8e-228 793.5 520 73.5
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 9.8e-228 793.5 518 74.1
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.1e-226 790.0 522 72.8
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.1e-226 790.0 577 67.2
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 3.1e-226 788.5 535 73.3
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 5.4e-226 787.7 519 73.0
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 9.1e-226 786.9 518 73.0
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 1.2e-225 786.6 520 72.1
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 2.7e-225 785.4 520 72.1
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 4.5e-225 784.6 518 73.2
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 5.9e-225 784.3 518 72.2
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 7.7e-225 783.9 521 72.7
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.7e-224 782.7 519 73.0
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 6.5e-224 780.8 518 72.0
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.9e-223 779.2 520 72.9
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 2.5e-223 778.9 519 72.4
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 5.5e-223 777.7 521 73.1
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 7.2e-223 777.3 508 73.8
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 2.1e-222 775.8 520 71.7
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 4.7e-222 774.6 527 71.3
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.8e-221 772.7 519 71.9
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 3.0e-221 771.9 527 71.7
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 6.8e-221 770.8 521 72.7
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 6.8e-221 770.8 518 71.6
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.5e-220 769.6 521 71.2
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 2.0e-220 769.2 510 72.2
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 5.7e-220 767.7 453 83.9
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 3.7e-219 765.0 523 70.6
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 1.1e-218 763.5 519 71.5
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.8e-218 762.7 522 71.5
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.1e-218 761.9 496 75.2
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 3.1e-218 761.9 519 70.7
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 7.0e-218 760.8 518 71.2
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 7.0e-218 760.8 518 70.3
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 7.7e-217 757.3 567 66.1
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 2.3e-216 755.7 524 69.8
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 5.0e-216 754.6 525 70.3
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.1e-215 753.4 518 69.9
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 3.3e-215 751.9 522 70.1
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 7.3e-215 750.7 518 68.5
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 2.1e-214 749.2 519 69.4
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 3.6e-214 748.4 519 70.3
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 6.1e-214 747.7 523 69.2
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.8e-213 746.1 518 68.1
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.2e-212 743.4 518 68.0
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.5e-212 743.0 518 68.0
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 2.0e-212 742.7 518 68.3
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 2.0e-212 742.7 518 67.8
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 2.0e-212 742.7 518 67.8
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 5.7e-212 741.1 518 68.1
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 5.7e-212 741.1 518 68.0
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 7.5e-212 740.7 518 68.7
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.9e-211 738.8 507 70.6
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 8.3e-211 737.3 571 64.3
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 2.4e-210 735.7 518 68.0
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 2.4e-210 735.7 518 67.2
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 3.2e-210 735.3 518 67.8
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.6e-209 733.0 596 61.9
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 3.5e-209 731.9 524 67.2
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 2.3e-208 729.2 518 67.0
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 6.6e-208 727.6 542 64.9
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 2.0e-204 716.1 521 65.8
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 4.9e-203 711.4 518 68.7
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 4.6e-201 704.9 447 75.4
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.1e-199 700.3 581 61.8
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 3.3e-199 698.7 527 64.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 4.4e-196 688.3 518 65.4
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 5.8e-196 688.0 542 62.9
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.7e-190 668.3 486 69.1
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 8.4e-179 630.9 447 67.6
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 8.4e-179 630.9 524 59.9
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 6.6e-176 621.3 467 65.1
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 1.3e-174 617.1 530 57.5
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.4e-173 612.8 410 72.7
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 3.1e-173 612.5 523 58.1
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 6.7e-168 594.7 396 72.7
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.3e-163 580.5 409 66.7
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 7.1e-162 574.7 409 66.3
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.7e-158 562.4 363 75.5
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.4e-157 560.5 363 75.2
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 2.6e-156 556.2 378 70.6
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 6.0e-153 545.0 363 72.7
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.0e-152 544.3 566 49.6
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 3.3e-143 512.7 369 68.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 4.3e-143 512.3 360 68.9
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 7.4e-143 511.5 364 69.5
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.3e-142 510.8 396 63.6
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-136 489.6 298 77.2
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 5.7e-135 485.3 387 64.3
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 3.0e-128 463.0 363 63.6
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.7e-102 376.3 222 78.8
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 3.7e-102 376.3 481 42.0
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 7.3e-98 362.1 423 45.6
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 1.1e-90 338.2 230 68.3
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.6e-89 333.2 247 68.4
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 3.4e-87 326.6 473 41.0
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 5.2e-80 302.8 187 79.1
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-75 288.1 159 84.9
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-75 288.1 159 84.9
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.2e-73 279.3 159 83.6
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 3.3e-66 256.9 181 68.5
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 4.9e-54 216.5 461 31.0
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.8e-43 181.4 106 81.1
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.7e-43 179.5 106 81.1
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.1e-42 178.7 94 89.4
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.3e-42 177.2 93 89.2
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 6.2e-41 172.9 141 57.4
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 2.0e-39 167.9 119 69.7
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 5.3e-32 143.3 91 70.3
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.3e-22 112.1 67 74.6
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 5.5e-21 106.7 87 58.6
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.0e-19 102.4 76 67.1
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-17 95.5 65 63.1
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.8e-17 94.4 70 64.3
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.4e-16 92.0 69 66.7
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 4.2e-13 80.5 122 39.3


User provided reference genes

Program Settings