Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 1.3e-155 553.1 314 100.0
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 6.7e-147 524.2 318 93.4
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 9.1e-128 460.7 341 80.9
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 4.5e-127 458.4 324 77.2
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 1.3e-126 456.8 324 84.0
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 2.5e-125 452.6 330 77.6
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.6e-100 370.2 321 65.1
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 3.6e-100 369.0 319 64.6
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 2.9e-97 359.4 319 64.9
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 3.7e-97 359.0 278 68.0
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 3.2e-96 355.9 322 63.0
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.2e-95 354.0 319 63.3
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 2.0e-95 353.2 276 69.2
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 8.6e-94 347.8 318 62.6
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 1.5e-93 347.1 317 59.0
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 2.8e-92 342.8 311 62.7
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 3.6e-92 342.4 321 61.1
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 3.6e-92 342.4 318 60.7
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.8e-91 340.1 316 62.0
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 1.8e-91 340.1 323 62.8
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 3.1e-91 339.3 326 60.7
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 4.0e-91 339.0 312 60.6
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 5.2e-91 338.6 327 59.6
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 1.5e-90 337.0 321 61.4
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 2.0e-90 336.7 313 59.7
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 7.5e-90 334.7 324 59.9
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 9.8e-90 334.3 322 59.3
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 2.2e-89 333.2 272 63.6
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.2e-89 333.2 319 61.1
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.7e-89 332.4 315 61.6
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 8.3e-89 331.3 290 64.8
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 1.1e-88 330.9 319 60.8
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 1.4e-88 330.5 317 59.0
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 2.4e-88 329.7 323 59.4
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.4e-88 329.7 262 67.9
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 4.1e-88 328.9 309 60.5
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 7.0e-88 328.2 300 62.0
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 9.2e-88 327.8 313 62.3
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 2.0e-87 326.6 327 57.8
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 2.7e-87 326.2 293 60.1
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 3.5e-87 325.9 315 59.4
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 3.5e-87 325.9 247 67.2
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 4.6e-87 325.5 303 60.7
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 6.0e-87 325.1 290 59.7
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 1.0e-86 324.3 237 78.1
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 1.0e-86 324.3 242 67.8
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 3.0e-86 322.8 324 55.6
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 6.6e-86 321.6 252 67.5
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 8.6e-86 321.2 261 66.3
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 8.6e-86 321.2 244 68.4
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 1.1e-85 320.9 254 65.7
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 1.5e-85 320.5 260 66.9
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 1.9e-85 320.1 259 65.3
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 7.3e-85 318.2 317 62.8
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 7.3e-85 318.2 274 64.2
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 7.3e-85 318.2 316 61.4
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 7.3e-85 318.2 368 53.5
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.6e-84 317.0 320 55.3
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 2.1e-84 316.6 279 61.3
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 2.1e-84 316.6 316 56.3
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 2.8e-84 316.2 203 77.8
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 2.8e-84 316.2 319 54.9
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 3.6e-84 315.8 322 57.5
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 3.6e-84 315.8 245 69.4
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 4.7e-84 315.5 251 66.5
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 6.2e-84 315.1 288 60.8
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.1e-83 314.3 271 62.4
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 1.4e-83 313.9 279 60.9
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.8e-83 313.5 286 61.9
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 1.8e-83 313.5 243 67.5
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 2.3e-83 313.2 299 56.5
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 3.1e-83 312.8 309 57.0
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 3.1e-83 312.8 307 57.7
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 4.0e-83 312.4 254 63.4
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 2.0e-82 310.1 254 68.1
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 2.0e-82 310.1 240 69.2
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 5.8e-82 308.5 242 67.4
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 7.5e-82 308.1 255 65.1
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 1.7e-81 307.0 248 65.7
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.2e-81 306.6 252 63.9
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 4.9e-81 305.4 227 69.2
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 8.3e-81 304.7 227 69.2
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 8.3e-81 304.7 227 69.2
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 1.4e-80 303.9 228 68.9
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 3.2e-80 302.8 249 64.7
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 3.2e-80 302.8 208 76.4
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 3.2e-80 302.8 310 55.8
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 2.7e-79 299.7 251 65.3
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 2.3e-78 296.6 289 56.4
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 3.9e-78 295.8 277 62.5
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 5.1e-78 295.4 227 67.4
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 5.1e-78 295.4 227 67.4
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 5.6e-77 292.0 312 53.8
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 9.5e-77 291.2 312 53.2
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.6e-76 290.4 234 66.2
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 8.1e-76 288.1 275 59.6
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.5e-74 283.9 203 71.9
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 2.0e-74 283.5 203 73.4
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 2.6e-74 283.1 198 73.2
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 5.8e-74 282.0 315 54.0
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 4.1e-72 275.8 199 69.8
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 1.7e-70 270.4 218 65.6
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.1e-69 267.7 203 70.9
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 8.7e-62 241.5 199 66.8
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 6.9e-59 231.9 214 55.1
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 1.4e-56 224.2 300 44.3
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 1.9e-56 223.8 234 51.3
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 7.9e-55 218.4 272 47.8
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 3.0e-54 216.5 205 54.1
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 4.3e-53 212.6 200 52.5
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.2e-50 204.5 223 50.7
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 1.6e-44 184.1 150 64.0
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 3.7e-36 156.4 133 61.7
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 4.5e-34 149.4 180 62.2
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 6.1e-23 112.5 86 62.8
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.8e-22 110.9 172 39.5
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 2.8e-20 103.6 73 74.0
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 3.7e-20 103.2 73 72.6
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 1.7e-09 67.8 56 67.9


User provided reference genes

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