Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.3e-93 345.5 173 100.0
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.5e-81 305.1 159 97.5
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.9e-79 299.3 159 95.0
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 5.6e-79 297.7 159 93.7
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 9.6e-79 297.0 159 95.0
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 9.0e-77 290.4 159 91.8
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.2e-74 282.0 159 89.9
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.1e-72 274.6 168 85.1
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.4e-61 240.0 168 77.4
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.0e-51 207.2 159 64.2
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.3e-51 206.8 159 66.0
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 2.9e-51 205.7 163 65.0
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 8.4e-51 204.1 158 69.0
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.1e-50 203.8 159 65.4
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.4e-50 203.4 159 61.6
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.9e-50 203.0 159 66.0
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.1e-50 201.1 161 64.6
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 3.5e-49 198.7 159 65.4
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 3.5e-49 198.7 159 61.6
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 4.6e-49 198.4 159 62.3
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 7.9e-49 197.6 159 62.9
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 7.9e-49 197.6 159 59.7
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.0e-48 197.2 157 65.6
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 2.3e-48 196.1 159 67.3
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.3e-48 196.1 159 61.6
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 3.0e-48 195.7 159 61.6
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 3.0e-48 195.7 157 62.4
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 5.1e-48 194.9 159 62.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 5.1e-48 194.9 159 62.3
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 6.7e-48 194.5 159 62.3
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.1e-47 193.7 159 60.4
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.5e-47 193.4 159 62.3
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.9e-47 193.0 159 60.4
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.5e-47 192.6 159 62.9
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 7.4e-47 191.0 159 60.4
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.6e-46 189.9 159 60.4
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.7e-46 188.7 159 59.1
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 6.3e-46 188.0 159 60.4
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 8.2e-46 187.6 159 59.1
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.8e-45 186.4 159 58.5
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 6.9e-45 184.5 159 57.9
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.5e-44 183.3 159 61.0
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 4.5e-44 181.8 159 56.6
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 7.7e-44 181.0 159 56.6
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 7.7e-44 181.0 159 56.6
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.3e-43 180.3 159 58.5
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.2e-43 179.5 159 56.6
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 6.5e-43 177.9 141 66.0
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.1e-42 177.2 160 58.1
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 5.5e-42 174.9 143 64.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.6e-41 171.8 159 58.5
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.0e-39 166.4 159 57.2
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.5e-39 166.0 159 57.2
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 2.5e-39 166.0 159 52.8
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 4.3e-39 165.2 151 55.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 8.2e-38 161.0 159 49.7
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.8e-37 159.8 159 51.6
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 5.3e-37 158.3 159 52.2
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 5.3e-37 158.3 161 52.8
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 6.9e-37 157.9 159 50.9
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-36 157.1 159 52.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.0e-36 156.4 159 52.8
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.6e-36 156.0 170 50.6
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 3.4e-36 155.6 165 52.1
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 3.4e-36 155.6 159 49.7
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.4e-36 155.6 159 49.7
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.7e-35 153.3 159 49.1
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 2.2e-35 152.9 159 54.1
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.9e-35 152.5 159 49.7
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.9e-35 152.5 160 51.2
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.0e-35 151.8 157 49.0
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 5.0e-35 151.8 159 49.1
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 8.5e-35 151.0 135 60.0
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.9e-34 149.8 159 49.1
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.9e-34 149.8 159 49.1
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 2.5e-34 149.4 159 47.8
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 3.2e-34 149.1 159 48.4
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 3.2e-34 149.1 159 50.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 4.2e-34 148.7 161 49.7
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 7.2e-34 147.9 159 47.8
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 7.2e-34 147.9 159 46.5
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.2e-33 147.1 172 46.5
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.6e-33 146.7 159 47.8
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.6e-33 146.7 159 47.8
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.6e-33 146.7 159 47.8
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 3.6e-33 145.6 159 45.9
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.6e-33 145.6 120 60.8
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 4.7e-33 145.2 159 45.9
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 7.9e-33 144.4 159 47.2
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.7e-32 141.4 172 45.3
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.1e-31 140.6 157 46.5
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.2e-30 136.3 108 60.2
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.8e-30 136.0 116 61.2
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.4e-29 132.9 164 45.7
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 7.0e-29 131.3 161 48.4
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 2.6e-28 129.4 171 42.1
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.9e-27 125.9 159 43.4
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.9e-26 123.2 137 51.8
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 4.2e-26 122.1 166 44.0
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.7e-25 119.4 80 70.0
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 4.0e-24 115.5 382 27.5
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 8.8e-24 114.4 66 77.3
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 2.6e-23 112.8 172 41.9
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.6e-23 112.8 75 68.0
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.3e-22 110.5 174 37.4
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.8e-21 106.7 127 47.2
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 4.1e-21 105.5 87 59.8
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.2e-20 104.0 205 35.1
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.5e-18 96.3 142 45.8
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 8.0e-17 91.3 76 53.9
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.2e-15 87.4 84 56.0
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.8e-14 82.8 81 58.0
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.1e-13 80.9 59 59.3
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 3.2e-10 69.3 134 35.1
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 3.0e-08 62.8 47 46.8


User provided reference genes

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