Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 9.1e-175 617.1 375 100.0
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 4.5e-142 508.4 376 87.2
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 7.7e-142 507.7 372 87.4
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 2.2e-104 383.3 380 68.7
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.0e-93 346.3 411 65.9
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 7.1e-79 298.5 288 64.2
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.4e-71 274.2 303 63.0
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.2e-59 233.8 376 45.7
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 7.7e-57 225.3 402 45.3
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 5.5e-55 219.2 369 43.6
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 8.8e-53 211.8 369 48.2
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.3e-51 208.0 370 47.3
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.2e-51 207.2 380 46.8
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.1e-50 204.9 375 47.7
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.5e-47 194.5 390 42.8
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 9.4e-47 191.8 386 40.7
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 1.1e-44 184.9 392 37.8
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 4.4e-44 183.0 392 39.3
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 9.7e-44 181.8 395 38.7
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.3e-43 181.4 396 47.7
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.7e-43 181.0 422 38.2
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 2.2e-43 180.6 332 40.4
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 2.8e-43 180.3 420 44.5
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 5.0e-40 169.5 379 42.2
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 5.0e-40 169.5 392 46.2
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 1.1e-39 168.3 451 38.8
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.1e-39 168.3 368 38.6
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 5.5e-39 166.0 329 41.9
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 1.2e-38 164.9 476 37.8
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 5.2e-37 159.5 408 36.0
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.2e-37 159.5 262 45.4
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.5e-36 157.9 436 35.1
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.5e-36 157.9 413 40.9
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 1.5e-36 157.9 460 37.2
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 2.6e-36 157.1 434 35.9
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.7e-36 156.0 440 35.0
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 7.5e-36 155.6 411 35.5
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 2.2e-35 154.1 278 46.8
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 2.2e-35 154.1 407 36.4
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.4e-34 151.4 423 35.7
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.4e-34 151.4 435 34.0
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 2.4e-34 150.6 185 58.4
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.1e-34 150.2 211 45.0
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 4.1e-34 149.8 147 57.8
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 5.4e-34 149.4 296 42.9
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 5.4e-34 149.4 438 37.9
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 9.1e-34 148.7 446 32.1
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 1.2e-33 148.3 166 55.4
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 2.0e-33 147.5 328 33.8
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.0e-32 145.2 166 53.0
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.3e-32 144.8 439 37.8
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.3e-32 144.8 439 37.8
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.7e-32 144.4 270 45.2
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 3.8e-32 143.3 354 40.4
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 6.5e-32 142.5 147 53.7
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 8.5e-32 142.1 447 34.9
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 5.5e-31 139.4 435 38.6
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 9.4e-31 138.7 140 63.6
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 1.2e-30 138.3 310 41.6
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.2e-30 138.3 154 56.5
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.2e-30 138.3 144 66.0
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.1e-30 137.5 319 41.7
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.1e-30 137.5 269 39.8
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.7e-30 137.1 430 37.2
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.7e-30 137.1 380 39.7
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 3.6e-30 136.7 426 31.5
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 8.0e-30 135.6 389 35.2
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 8.0e-30 135.6 140 62.9
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 1.8e-29 134.4 385 37.7
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 1.8e-29 134.4 385 37.7
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.8e-29 134.4 400 38.2
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 3.0e-29 133.7 334 34.1
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 4.0e-29 133.3 275 38.5
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 6.8e-29 132.5 393 37.9
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 1.5e-28 131.3 360 35.0
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 2.0e-28 131.0 390 33.8
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.6e-28 130.6 140 65.0
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.6e-28 130.6 140 65.0
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.4e-28 130.2 309 35.6
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 4.4e-28 129.8 140 63.6
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 4.4e-28 129.8 189 55.0
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 9.8e-28 128.6 140 64.3
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 1.3e-27 128.3 389 33.9
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.2e-27 127.5 312 36.5
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 2.2e-27 127.5 424 33.5
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 4.9e-27 126.3 398 39.7
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.9e-27 126.3 312 37.8
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.9e-27 126.3 351 35.3
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.9e-27 126.3 351 35.3
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 4.9e-27 126.3 127 56.7
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 8.3e-27 125.6 273 39.2
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 1.1e-26 125.2 398 42.7
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 1.1e-26 125.2 184 55.4
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 5.4e-26 122.9 297 34.7
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 7.0e-26 122.5 392 37.2
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 7.0e-26 122.5 139 50.4
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.2e-25 121.7 422 34.4
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 2.0e-25 120.9 370 36.2
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 2.0e-25 120.9 352 31.2
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 4.5e-25 119.8 412 31.8
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 5.9e-25 119.4 374 34.2
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 5.9e-25 119.4 139 54.7
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 1.0e-24 118.6 303 40.3
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.0e-24 118.6 136 49.3
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-24 118.2 359 38.2
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 2.9e-24 117.1 191 47.6
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 6.6e-24 115.9 139 57.6
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 8.6e-24 115.5 146 52.7
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 7.2e-23 112.5 307 38.1
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 9.5e-23 112.1 221 39.4
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 1.2e-22 111.7 406 32.3
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.1e-22 110.9 360 34.7
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 2.8e-22 110.5 128 68.0
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 4.7e-22 109.8 351 39.9
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 4.7e-22 109.8 411 35.3
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 8.0e-22 109.0 223 46.6
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 2.6e-20 104.0 135 50.4
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 9.2e-18 95.5 351 33.0
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 1.6e-17 94.7 186 38.7
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 2.5e-15 87.4 378 33.3
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 8.0e-14 82.4 268 37.3
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.4e-13 81.6 199 34.7
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 4.0e-13 80.1 137 45.3
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 5.2e-13 79.7 60 66.7
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 1.2e-12 78.6 45 75.6
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 1.5e-12 78.2 169 50.3
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 4.9e-11 73.2 183 33.9
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.4e-10 70.9 330 35.2
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 4.1e-10 70.1 135 56.3
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 1.2e-09 68.6 349 26.9
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 2.7e-09 67.4 159 38.4
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 3.5e-09 67.0 163 38.7
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 3.0e-08 63.9 177 32.8
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 5.0e-08 63.2 153 41.8


User provided reference genes

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