Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 0.0e+00 1222.2 611 100.0
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 0.0e+00 1181.8 611 96.4
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 0.0e+00 1177.2 611 95.9
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 0.0e+00 1103.2 602 91.2
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.1e-305 1052.7 634 85.0
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.1e-290 1001.9 680 77.9
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 9.4e-246 853.6 599 76.3
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 4.8e-242 841.3 601 69.7
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 5.9e-240 834.3 617 68.6
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.8e-231 805.1 609 68.8
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.2e-229 800.0 608 66.9
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.8e-226 788.9 573 69.3
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 3.1e-225 785.4 609 66.2
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 2.0e-224 782.7 577 69.2
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 1.3e-223 780.0 605 66.0
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 3.8e-223 778.5 609 64.7
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 6.5e-223 777.7 604 65.2
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 2.5e-222 775.8 578 67.5
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 3.6e-221 771.9 616 65.6
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 6.1e-221 771.2 610 64.3
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 2.6e-219 765.8 606 64.5
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 2.6e-219 765.8 608 64.8
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 2.8e-218 762.3 601 64.1
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 4.1e-217 758.4 600 63.2
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 6.5e-215 751.1 609 65.8
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.1e-214 750.4 613 63.6
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 5.5e-214 748.0 609 63.4
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 2.8e-213 745.7 618 62.8
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 8.0e-213 744.2 620 61.6
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 1.8e-212 743.0 595 63.7
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 3.0e-212 742.3 618 59.9
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 4.0e-212 741.9 611 61.0
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 4.0e-212 741.9 602 64.1
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 5.2e-212 741.5 606 61.9
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 1.2e-211 740.3 612 60.5
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 1.5e-211 740.0 612 60.1
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 2.0e-211 739.6 609 61.9
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 2.6e-211 739.2 606 62.4
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.6e-211 739.2 603 63.0
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 3.4e-211 738.8 610 63.0
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 2.8e-210 735.7 623 59.7
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 4.9e-210 734.9 607 61.3
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 3.1e-209 732.3 607 61.4
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 7.0e-209 731.1 609 61.9
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 9.2e-209 730.7 610 62.6
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 9.2e-209 730.7 575 64.9
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 3.5e-208 728.8 609 61.7
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 1.0e-207 727.2 609 59.9
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 3.8e-207 725.3 601 61.2
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.5e-206 723.4 608 62.2
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 1.9e-206 723.0 605 60.3
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 3.3e-206 722.2 613 59.7
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 3.3e-206 722.2 605 63.3
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 4.3e-206 721.8 602 61.1
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 5.6e-206 721.5 605 63.0
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 9.5e-206 720.7 609 62.1
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 1.2e-205 720.3 612 61.6
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 6.1e-205 718.0 602 60.5
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-204 716.8 613 59.4
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.4e-204 716.8 528 67.2
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 5.2e-204 714.9 582 63.6
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.3e-202 710.3 599 61.4
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.7e-202 709.9 605 60.8
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 6.4e-202 708.0 608 61.7
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 2.0e-200 703.0 586 61.9
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 2.7e-200 702.6 569 63.4
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.3e-199 700.3 608 60.7
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 3.1e-196 689.1 604 59.1
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 6.4e-194 681.4 603 59.5
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.1e-193 680.6 578 59.7
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 4.1e-193 678.7 588 59.5
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 5.4e-193 678.3 609 57.8
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 7.0e-193 677.9 588 59.4
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 1.2e-192 677.2 577 60.1
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 4.6e-192 675.2 603 59.2
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 1.7e-191 673.3 588 59.7
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 5.0e-191 671.8 587 58.4
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 6.6e-191 671.4 607 58.6
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.1e-190 670.6 611 58.6
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 3.3e-190 669.1 603 58.5
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 9.5e-190 667.5 597 58.1
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.1e-188 664.1 584 58.9
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 5.2e-188 661.8 545 65.1
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 2.6e-187 659.4 607 58.0
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 2.6e-187 659.4 607 58.0
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 9.9e-187 657.5 607 58.2
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 1.3e-186 657.1 614 57.0
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 2.2e-186 656.4 598 59.2
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.1e-184 649.8 654 54.7
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 1.6e-181 640.2 558 58.6
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 4.0e-180 635.6 601 57.9
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.3e-178 630.6 614 55.2
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.9e-177 626.7 593 56.2
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.2e-176 624.0 596 55.2
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 2.1e-176 623.2 612 57.7
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 6.0e-176 621.7 610 55.9
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 1.0e-175 620.9 613 53.7
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.6e-173 613.6 579 55.8
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 2.1e-173 613.2 602 53.8
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.1e-172 609.4 539 60.1
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 4.4e-171 605.5 620 54.2
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 1.7e-167 593.6 601 53.4
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.9e-166 590.1 443 65.9
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 2.1e-165 586.6 559 55.3
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 5.1e-159 565.5 569 54.7
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 6.7e-159 565.1 603 51.6
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 2.4e-156 556.6 469 60.1
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 7.9e-152 541.6 594 49.8
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.3e-149 534.3 344 74.7
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 2.1e-144 516.9 444 61.5
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 6.3e-141 505.4 543 52.9
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 2.1e-120 437.2 610 43.0
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 1.8e-116 424.1 610 39.7
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 4.5e-115 419.5 519 46.6
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 4.2e-105 386.3 560 39.8
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 2.7e-104 383.6 571 39.2
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 4.7e-96 356.3 339 53.4
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.6e-88 331.3 342 50.6
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 6.4e-85 319.3 241 63.1
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-82 312.0 376 46.3
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 1.6e-72 278.1 229 58.5
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.7e-69 266.9 229 59.0
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 4.1e-68 263.5 450 34.4
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.0e-62 244.6 301 45.2
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 1.5e-57 228.4 213 55.9
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 3.6e-56 223.8 187 60.4
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 6.0e-35 153.3 263 37.3
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 7.4e-33 146.4 204 44.6
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.3e-32 145.6 173 43.9
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 2.4e-23 114.8 74 75.7
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.5e-22 112.1 210 36.7
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 4.5e-22 110.5 418 25.4
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 1.9e-20 105.1 228 35.5
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.9e-20 105.1 328 28.0
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 3.7e-16 90.9 49 79.6
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.0e-13 82.8 94 54.3
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 7.2e-12 76.6 165 31.5
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 4.4e-09 67.4 53 54.7


User provided reference genes

Program Settings