Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017418 Solanum tuberosum HOM05D000403 ORTHO05D009445 1.4e-53 212.6 102 100.0
Solyc07g045090.3 Solanum lycopersicum HOM05D000403 ORTHO05D009445 1.0e-35 153.3 214 43.9
Sopen07g023650 Solanum pennellii HOM05D000403 ORTHO05D009445 1.0e-35 153.3 214 43.9
Nitab4.5_0008471g0020 Nicotiana tabacum HOM05D000403 ORTHO05D009445 2.4e-29 132.1 221 38.0
Solyc07g045080.3 Solanum lycopersicum HOM05D000403 ORTHO05D009445 3.8e-27 124.8 219 38.4
Nitab4.5_0003683g0040 Nicotiana tabacum HOM05D000403 ORTHO05D009445 1.0e-24 116.7 190 37.4
Sopen07g023640 Solanum pennellii HOM05D000403 ORTHO05D009445 1.4e-24 116.3 76 73.7
AUR62018639 Chenopodium quinoa HOM05D000403 ORTHO05D009445 5.9e-20 100.9 143 39.2
AUR62018640 Chenopodium quinoa HOM05D000403 ORTHO05D009445 1.0e-19 100.1 85 55.3
VMungo1080G1541 Vigna mungo HOM05D000403 ORTHO05D009445 1.7e-19 99.4 75 61.3
VMungo1080G0463 Vigna mungo HOM05D000403 ORTHO05D009445 2.9e-19 98.6 79 59.5
Glyma.12G193500 Glycine max HOM05D000403 ORTHO05D009445 3.8e-19 98.2 79 58.2
Thecc.02G365200 Theobroma cacao HOM05D000403 ORTHO05D009445 6.6e-19 97.4 75 62.7
Hund14374 Selenicereus undatus HOM05D000403 ORTHO05D009445 8.6e-19 97.1 75 58.7
CSS0021915 Camellia sinensis var. sinensis HOM05D000403 ORTHO05D009445 1.1e-18 96.7 75 58.7
FvH4_6g43110 Fragaria vesca HOM05D000403 ORTHO05D009445 1.1e-18 96.7 195 30.8
TAR629G3467 Trochodendron aralioides HOM05D000403 ORTHO05D009445 1.1e-18 96.7 77 59.7
QL08p032984 Quercus lobata HOM05D000403 ORTHO05D009445 1.9e-18 95.9 79 58.2
Duzib248G0066 Durio zibethinus HOM05D000403 ORTHO05D009445 5.6e-18 94.4 74 62.2
Duzib248G0215 Durio zibethinus HOM05D000403 ORTHO05D009445 5.6e-18 94.4 74 62.2
Rhsim04G0052900 Rhododendron simsii HOM05D000403 ORTHO05D009445 5.6e-18 94.4 75 56.0
TAR629G0319 Trochodendron aralioides HOM05D000403 ORTHO05D009445 5.6e-18 94.4 75 58.7
TAR629G3358 Trochodendron aralioides HOM05D000403 ORTHO05D009445 5.6e-18 94.4 75 57.3
arahy.Tifrunner.gnm1.ann1.X88PWA Arachis hypogaea HOM05D000403 ORTHO05D009445 7.3e-18 94.0 84 57.1
Gohir.A12G173933 Gossypium hirsutum HOM05D000403 ORTHO05D009445 7.3e-18 94.0 75 58.7
Gohir.D12G176500 Gossypium hirsutum HOM05D000403 ORTHO05D009445 7.3e-18 94.0 75 58.7
Lj3g0009464 Lotus japonicus HOM05D000403 ORTHO05D009445 7.3e-18 94.0 75 57.3
Prupe.3G216700 Prunus persica HOM05D000403 ORTHO05D009445 7.3e-18 94.0 73 57.5
Dinv39715 Davidia involucrata HOM05D000403 ORTHO05D009445 9.5e-18 93.6 77 53.2
Duzib248G1425 Durio zibethinus HOM05D000403 ORTHO05D009445 9.5e-18 93.6 74 62.2
Manes.12G074200 Manihot esculenta HOM05D000403 ORTHO05D009445 9.5e-18 93.6 74 56.8
Sc01g0007130 Simmondsia chinensis HOM05D000403 ORTHO05D009445 9.5e-18 93.6 72 58.3
FAN02G3267 Fragaria x ananassa HOM05D000403 ORTHO05D009445 1.6e-17 92.8 76 53.9
FAN09G4385 Fragaria x ananassa HOM05D000403 ORTHO05D009445 1.6e-17 92.8 76 53.9
CSS0010467 Camellia sinensis var. sinensis HOM05D000403 ORTHO05D009445 2.1e-17 92.4 74 58.1
FAN05G5690 Fragaria x ananassa HOM05D000403 ORTHO05D009445 2.1e-17 92.4 79 53.2
arahy.Tifrunner.gnm1.ann1.UT8XDE Arachis hypogaea HOM05D000403 ORTHO05D009445 2.8e-17 92.0 84 56.0
Cfa014391 Carpinus fangiana HOM05D000403 ORTHO05D009445 2.8e-17 92.0 75 57.3
CiPaw.04G115300 Carya illinoinensis HOM05D000403 ORTHO05D009445 2.8e-17 92.0 75 56.0
FAN14G2511 Fragaria x ananassa HOM05D000403 ORTHO05D009445 2.8e-17 92.0 75 54.7
Nitab4.5_0008964g0010 Nicotiana tabacum HOM05D000403 ORTHO05D009445 2.8e-17 92.0 134 41.8
Aqoxy1G02110 Aquilegia oxysepala HOM05D000403 ORTHO05D009445 3.6e-17 91.7 75 57.3
FAN14G5235 Fragaria x ananassa HOM05D000403 ORTHO05D009445 3.6e-17 91.7 76 52.6
Gorai.008G188900 Gossypium raimondii HOM05D000403 ORTHO05D009445 3.6e-17 91.7 75 57.3
Lj8A126G68 Lonicera japonica HOM05D000403 ORTHO05D009445 3.6e-17 91.7 75 53.3
Actinidia04541 Actinidia chinensis HOM05D000403 ORTHO05D009445 4.7e-17 91.3 75 56.0
Glyma.13G309100 Glycine max HOM05D000403 ORTHO05D009445 6.1e-17 90.9 75 60.0
Medtr2g088190 Medicago truncatula HOM05D000403 ORTHO05D009445 6.1e-17 90.9 75 56.0
Hma1.2p1_0249F.1_g102283 Hydrangea macrophylla HOM05D000403 ORTHO05D009445 8.0e-17 90.5 75 54.7
MD09G1109600 Malus domestica HOM05D000403 ORTHO05D009445 8.0e-17 90.5 76 53.9
Cpa.g.sc87.84 Carica papaya HOM05D000403 ORTHO05D009445 1.0e-16 90.1 75 53.3
Haze_12857 Corylus avellana HOM05D000403 ORTHO05D009445 1.0e-16 90.1 74 56.8
RcHm_v2.0_Chr2g0159131 Rosa chinensis HOM05D000403 ORTHO05D009445 1.0e-16 90.1 75 53.3
vmacro09335 Vaccinium macrocarpon HOM05D000403 ORTHO05D009445 1.8e-16 89.4 75 52.0
Ciclev10017567m.g Citrus clementina HOM05D000403 ORTHO05D009445 2.3e-16 89.0 77 53.2
Glyma.12G193400 Glycine max HOM05D000403 ORTHO05D009445 3.0e-16 88.6 75 57.3
AUR62007354 Chenopodium quinoa HOM05D000403 ORTHO05D009445 4.0e-16 88.2 76 52.6
Psat5g263520 Pisum sativum HOM05D000403 ORTHO05D009445 5.2e-16 87.8 75 53.3
Medtr2g088200 Medicago truncatula HOM05D000403 ORTHO05D009445 8.9e-16 87.0 75 53.3
Eucgr.K00793 Eucalyptus grandis HOM05D000403 ORTHO05D009445 1.2e-15 86.7 75 49.3
FvH4_6g43100 Fragaria vesca HOM05D000403 ORTHO05D009445 2.0e-15 85.9 73 50.7
TPR.G4225 Trifolium pratense HOM05D000403 ORTHO05D009445 2.0e-15 85.9 75 53.3
Phvul.005G115400 Phaseolus vulgaris HOM05D000403 ORTHO05D009445 2.6e-15 85.5 75 56.0
RcHm_v2.0_Chr2g0159121 Rosa chinensis HOM05D000403 ORTHO05D009445 2.6e-15 85.5 76 48.7
Actinidia08390 Actinidia chinensis HOM05D000403 ORTHO05D009445 3.4e-15 85.1 75 54.7
Lsat_1_v5_gn_0_44741 Lactuca sativa HOM05D000403 ORTHO05D009445 3.4e-15 85.1 74 52.7
Lsat_1_v5_gn_9_106281 Lactuca sativa HOM05D000403 ORTHO05D009445 3.4e-15 85.1 74 52.7
Lj3g0008441 Lotus japonicus HOM05D000403 ORTHO05D009445 3.4e-15 85.1 70 54.3
GSVIVG01030431001 Vitis vinifera HOM05D000403 ORTHO05D009445 3.4e-15 85.1 75 52.0
Medtr2g088220 Medicago truncatula HOM05D000403 ORTHO05D009445 4.4e-15 84.7 75 52.0
Cpa.g.sc87.82 Carica papaya HOM05D000403 ORTHO05D009445 5.8e-15 84.3 75 49.3
ECA240G3051 Erigeron canadensis HOM05D000403 ORTHO05D009445 2.2e-14 82.4 75 52.0
PGR142G3846 Punica granatum HOM05D000403 ORTHO05D009445 2.2e-14 82.4 75 53.3
Psat5g263560 Pisum sativum HOM05D000403 ORTHO05D009445 2.9e-14 82.0 78 50.0
GSVIVG01030433001 Vitis vinifera HOM05D000403 ORTHO05D009445 3.7e-14 81.6 75 50.7
Ca_01604_v3 Cicer arietinum L. HOM05D000403 ORTHO05D009445 6.4e-14 80.9 75 49.3
Nn1g07151 Nelumbo nucifera HOM05D000403 ORTHO05D009445 6.4e-14 80.9 74 47.3
Eucgr.K00795 Eucalyptus grandis HOM05D000403 ORTHO05D009445 1.4e-13 79.7 75 46.7
Eucgr.D01327 Eucalyptus grandis HOM05D000403 ORTHO05D009445 2.4e-13 79.0 76 50.0
PGR142G0967 Punica granatum HOM05D000403 ORTHO05D009445 2.4e-13 79.0 83 47.0
Ah.07g200920 Amaranthus hybridus HOM05D009930 ORTHO05D012156 3.5e-12 75.1 65 53.8
Eucgr.D01328 Eucalyptus grandis HOM05D000403 ORTHO05D009445 4.3e-10 68.2 74 43.2
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 9.5e-10 67.0 194 31.4
MBI07_g33753_MAGBIO Magnolia biondii HOM05D000403 ORTHO05D000350 1.1e-08 63.5 78 43.6
Cfa022713 Carpinus fangiana HOM05D000403 ORTHO05D009445 5.2e-08 61.2 54 57.4
Nitab4.5_0008471g0030 Nicotiana tabacum HOM05D000403 ORTHO05D009445 8.9e-08 60.5 28 89.3
Nitab4.5_0001213g0080 Nicotiana tabacum HOM05D000403 ORTHO05D009445 9.8e-07 57.0 28 82.1
Nitab4.5_0007220g0010 Nicotiana tabacum HOM05D000403 ORTHO05D009445 1.3e-06 56.6 46 56.5


User provided reference genes

Program Settings