Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.3e-105 386.0 254 100.0
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 6.7e-89 331.3 271 79.7
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 4.4e-88 328.6 271 79.0
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 5.5e-83 311.6 263 73.8
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.6e-80 302.8 270 74.4
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.7e-80 301.6 270 74.8
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 1.1e-67 260.8 288 60.4
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 8.3e-55 218.0 343 51.0
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 2.1e-50 203.4 272 57.7
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 8.9e-49 198.0 284 61.3
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 8.9e-49 198.0 327 45.6
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 8.9e-49 198.0 313 49.8
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 2.6e-48 196.4 229 60.7
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 2.6e-48 196.4 276 46.0
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 3.4e-48 196.1 282 50.4
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.2e-47 193.4 117 78.6
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 2.2e-47 193.4 296 55.4
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 6.4e-47 191.8 287 54.4
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 6.4e-47 191.8 280 51.1
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 1.9e-46 190.3 289 55.0
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 3.2e-46 189.5 265 52.8
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 1.6e-45 187.2 299 52.8
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 1.3e-44 184.1 298 43.3
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 1.7e-44 183.7 288 53.1
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 1.7e-44 183.7 310 47.4
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 3.0e-44 183.0 270 50.7
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 3.9e-44 182.6 306 46.7
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 5.0e-44 182.2 294 59.2
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 5.0e-44 182.2 288 51.4
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.1e-43 181.0 298 51.0
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 1.5e-43 180.6 263 54.0
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.5e-43 180.6 304 51.3
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 2.5e-43 179.9 299 43.1
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 3.3e-43 179.5 290 45.2
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 3.3e-43 179.5 276 46.7
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 3.3e-43 179.5 111 76.6
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.6e-43 178.7 117 74.4
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 7.3e-43 178.3 259 52.1
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 7.3e-43 178.3 309 50.2
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.3e-43 178.3 117 73.5
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 7.3e-43 178.3 117 76.1
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 9.5e-43 177.9 111 77.5
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.6e-42 177.2 297 51.9
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 1.6e-42 177.2 270 49.3
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 2.1e-42 176.8 281 46.6
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 2.8e-42 176.4 319 50.5
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 8.1e-42 174.9 285 53.3
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.4e-41 174.1 115 72.2
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 1.8e-41 173.7 307 51.5
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 4.0e-41 172.6 304 53.3
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 5.2e-41 172.2 259 54.1
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 5.2e-41 172.2 310 46.8
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 5.2e-41 172.2 295 48.5
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 6.8e-41 171.8 300 54.7
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 8.9e-41 171.4 114 72.8
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 8.9e-41 171.4 277 48.4
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 1.2e-40 171.0 112 75.9
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 1.5e-40 170.6 117 70.9
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 2.0e-40 170.2 117 70.1
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.6e-40 169.9 117 70.9
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 5.8e-40 168.7 387 42.4
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 7.5e-40 168.3 256 50.0
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 2.9e-39 166.4 118 67.8
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 2.9e-39 166.4 113 69.0
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 2.9e-39 166.4 332 42.5
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 2.9e-39 166.4 257 51.0
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 8.3e-39 164.9 289 50.2
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.1e-38 164.5 314 47.5
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 1.9e-38 163.7 123 63.4
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 1.9e-38 163.7 310 47.1
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 2.4e-38 163.3 284 54.9
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 2.4e-38 163.3 245 41.2
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 4.1e-38 162.5 284 54.6
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 4.1e-38 162.5 284 54.6
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 4.1e-38 162.5 284 54.6
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 4.1e-38 162.5 284 54.6
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 4.1e-38 162.5 224 50.4
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 5.4e-38 162.2 255 54.5
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 7.1e-38 161.8 345 41.7
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 7.1e-38 161.8 115 65.2
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 7.1e-38 161.8 254 56.7
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 1.2e-37 161.0 113 69.0
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 1.6e-37 160.6 284 52.5
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.1e-37 160.2 113 64.6
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 2.1e-37 160.2 113 66.4
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 2.1e-37 160.2 127 63.8
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 2.1e-37 160.2 285 40.4
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.7e-37 159.8 113 63.7
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 2.7e-37 159.8 253 51.4
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 1.0e-36 157.9 320 47.2
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 1.0e-36 157.9 275 53.8
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 1.3e-36 157.5 289 49.1
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 1.7e-36 157.1 113 63.7
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 1.7e-36 157.1 113 63.7
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 2.3e-36 156.8 113 63.7
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 2.3e-36 156.8 109 65.1
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 3.9e-36 156.0 110 64.5
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 5.1e-36 155.6 110 64.5
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 6.6e-36 155.2 126 58.7
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 6.6e-36 155.2 111 64.0
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.5e-35 154.1 255 53.7
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 1.9e-35 153.7 120 65.0
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 1.9e-35 153.7 120 65.0
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 1.9e-35 153.7 120 65.0
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 1.9e-35 153.7 120 65.0
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 1.9e-35 153.7 120 65.0
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 1.9e-35 153.7 317 49.5
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 1.9e-35 153.7 317 42.6
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 1.9e-35 153.7 325 47.7
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 3.3e-35 152.9 113 61.9
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 3.3e-35 152.9 113 61.9
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 5.6e-35 152.1 122 64.8
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 9.5e-35 151.4 302 53.3
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 9.5e-35 151.4 111 61.3
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 1.2e-34 151.0 317 43.5
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 1.2e-34 151.0 234 40.2
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 4.7e-34 149.1 295 50.5
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 4.7e-34 149.1 242 47.9
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 6.2e-34 148.7 113 62.8
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 8.1e-34 148.3 115 65.2
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 8.1e-34 148.3 349 43.3
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 8.1e-34 148.3 113 58.4
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 8.1e-34 148.3 256 44.9
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 1.1e-33 147.9 274 49.3
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 1.4e-33 147.5 109 61.5
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 1.8e-33 147.1 240 44.6
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 2.3e-33 146.7 301 42.5
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 1.2e-32 144.4 113 56.6
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 2.0e-32 143.7 304 43.1
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 3.4e-32 142.9 116 62.9
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 4.4e-32 142.5 104 61.5
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 4.4e-32 142.5 236 47.5
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 7.6e-32 141.7 107 63.6
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 9.9e-32 141.4 114 62.3
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 9.9e-32 141.4 293 45.1
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 3.8e-31 139.4 109 62.4
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 3.8e-31 139.4 111 57.7
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 3.8e-31 139.4 245 42.9
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 4.9e-31 139.0 234 44.9
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 8.4e-31 138.3 114 60.5
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.1e-30 137.9 116 59.5
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 5.4e-30 135.6 124 60.5
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 1.2e-29 134.4 118 57.6
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 3.5e-29 132.9 114 58.8
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 6.0e-29 132.1 111 57.7
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 6.0e-29 132.1 115 60.0
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.0e-28 131.3 113 57.5
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 3.0e-28 129.8 108 59.3
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 1.9e-27 127.1 113 59.3
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 2.5e-27 126.7 115 58.3
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 2.5e-27 126.7 115 58.3
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 2.5e-27 126.7 115 58.3
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 2.5e-27 126.7 278 47.1
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 4.3e-27 125.9 115 58.3
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 5.6e-27 125.6 165 44.2
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 7.3e-27 125.2 336 46.7
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 7.3e-27 125.2 117 53.8
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 3.1e-25 119.8 116 54.3
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 5.2e-25 119.0 96 62.5
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 6.9e-25 118.6 102 56.9
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 6.9e-25 118.6 249 49.4
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 4.4e-24 115.9 111 56.8
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 3.8e-23 112.8 111 54.1
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 4.9e-23 112.5 90 57.8
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.1e-22 111.3 113 51.3
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 1.4e-22 110.9 112 52.7
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 2.4e-22 110.2 101 54.5
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 1.1e-19 101.3 193 61.1
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 1.3e-18 97.8 106 48.1
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 2.9e-15 86.7 109 45.0
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 3.8e-15 86.3 105 45.7
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 9.3e-14 81.6 108 45.4
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 3.0e-12 76.6 124 39.5
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.3e-10 71.2 108 40.7
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.3e-10 71.2 110 40.0
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.6e-10 70.9 111 38.7
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 1.6e-10 70.9 115 40.9
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.1e-10 70.5 67 55.2
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 8.1e-10 68.6 108 38.0
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.4e-09 67.8 106 37.7
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 4.0e-09 66.2 40 60.0
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 3.4e-08 63.2 53 56.6
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 4.9e-07 59.3 114 32.5
Mapoly0037s0134 Marchantia polymorpha HOM05D007363 ORTHO05D009018 4.2e-06 56.2 106 40.6
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 5.5e-06 55.8 86 39.5


User provided reference genes

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