Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017200 Solanum tuberosum HOM05D001861 ORTHO05D001868 8.9e-128 460.7 306 100.0
Sopen09g033460 Solanum pennellii HOM05D001861 ORTHO05D001868 3.1e-96 355.9 307 86.0
CAN.G220.91 Capsicum annuum HOM05D001861 ORTHO05D001868 7.6e-87 324.7 308 71.8
Nitab4.5_0002709g0080 Nicotiana tabacum HOM05D001861 ORTHO05D001868 2.3e-75 286.6 314 60.8
Nitab4.5_0001051g0050 Nicotiana tabacum HOM05D001861 ORTHO05D001868 4.8e-73 278.9 313 57.2
Peaxi162Scf00033g02833 Petunia axillaris HOM05D001861 ORTHO05D001868 4.5e-47 192.6 306 43.8
Cc03_g06000 Coffea canephora HOM05D001861 ORTHO05D001868 3.4e-26 123.2 334 35.9
Dinv29817 Davidia involucrata HOM05D001861 ORTHO05D001868 1.7e-22 110.9 318 33.3
Dinv27095 Davidia involucrata HOM05D001861 ORTHO05D001868 4.2e-21 106.3 335 34.9
Hma1.2p1_0112F.1_g054560 Hydrangea macrophylla HOM05D001861 ORTHO05D001868 1.2e-20 104.8 315 41.0
Oeu002285.1 Olea europaea HOM05D001861 ORTHO05D001868 6.8e-19 99.0 305 31.8
Prupe.1G046000 Prunus persica HOM05D001861 ORTHO05D001868 2.0e-18 97.4 308 36.4
Rhsim04G0173700 Rhododendron simsii HOM05D001861 ORTHO05D001868 4.9e-17 92.8 307 31.9
TWI09G0555 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 6.3e-17 92.4 298 31.9
TAR365G0301 Trochodendron aralioides HOM05D001861 ORTHO05D001868 1.4e-16 91.3 333 35.4
Haze_11444 Corylus avellana HOM05D001861 ORTHO05D001868 3.1e-16 90.1 284 34.5
Atru.chr4.1932 Acer truncatum HOM05D001861 ORTHO05D001868 4.1e-16 89.7 318 33.6
Potri.010G067300 Populus trichocarpa HOM05D001861 ORTHO05D001868 4.1e-16 89.7 313 35.5
Gohir.D10G159500 Gossypium hirsutum HOM05D001861 ORTHO05D001868 7.0e-16 89.0 315 34.3
Gorai.011G179100 Gossypium raimondii HOM05D001861 ORTHO05D001868 7.0e-16 89.0 315 34.3
TAR362G1165 Trochodendron aralioides HOM05D001861 ORTHO05D001868 9.1e-16 88.6 331 33.2
Cfa014768 Carpinus fangiana HOM05D001861 ORTHO05D001868 1.2e-15 88.2 326 38.7
Ciclev10005356m.g Citrus clementina HOM05D001861 ORTHO05D001868 2.0e-15 87.4 345 31.3
Manes.15G044200 Manihot esculenta HOM05D001861 ORTHO05D001868 2.7e-15 87.0 344 30.8
MD16G1224700 Malus domestica HOM05D001861 ORTHO05D001868 3.5e-15 86.7 294 35.4
Actinidia20830 Actinidia chinensis HOM05D001861 ORTHO05D001868 5.9e-15 85.9 307 29.6
TAR633G1161 Trochodendron aralioides HOM05D001861 ORTHO05D001868 5.9e-15 85.9 331 34.4
CSS0000256 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 7.7e-15 85.5 332 34.3
Potri.008G170600 Populus trichocarpa HOM05D001861 ORTHO05D001868 1.0e-14 85.1 310 35.5
Gohir.A10G108300 Gossypium hirsutum HOM05D001861 ORTHO05D001868 1.3e-14 84.7 315 34.6
MELO3C023034.2 Cucumis melo HOM05D001861 ORTHO05D001868 2.3e-14 84.0 302 34.8
Nn1g02913 Nelumbo nucifera HOM05D001861 ORTHO05D001868 2.9e-14 83.6 340 35.0
CiPaw.01G179500 Carya illinoinensis HOM05D001861 ORTHO05D001868 5.0e-14 82.8 345 29.3
Sabra08G0130400 Salix brachista HOM05D001861 ORTHO05D001868 5.0e-14 82.8 325 31.4
Atru.chr5.1809 Acer truncatum HOM05D001861 ORTHO05D001868 8.6e-14 82.0 310 27.7
CsaV3_2G012510 Cucumis sativus L. HOM05D001861 ORTHO05D001868 1.1e-13 81.6 302 30.1
Manes.03G160500 Manihot esculenta HOM05D001861 ORTHO05D001868 1.9e-13 80.9 364 32.1
QL06p020698 Quercus lobata HOM05D001861 ORTHO05D001868 1.9e-13 80.9 312 33.7
vmacro08539 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 2.5e-13 80.5 306 30.4
MSTRG.9871 Avicennia marina HOM05D001861 ORTHO05D001868 3.3e-13 80.1 325 30.8
GSVIVG01027898001 Vitis vinifera HOM05D001861 ORTHO05D001868 3.3e-13 80.1 327 36.1
Duzib151G0538 Durio zibethinus HOM05D001861 ORTHO05D001868 4.2e-13 79.7 331 30.8
Ca_09807_v3 Cicer arietinum L. HOM05D001861 ORTHO05D001868 5.5e-13 79.3 313 29.7
Ca_30488_v3 Cicer arietinum L. HOM05D001861 ORTHO05D001868 5.5e-13 79.3 313 29.7
Glyma.10G189700 Glycine max HOM05D001861 ORTHO05D001868 5.5e-13 79.3 303 32.0
MD05G1191900 Malus domestica HOM05D001861 ORTHO05D001868 1.6e-12 77.8 314 34.7
Medtr1g073670 Medicago truncatula HOM05D001861 ORTHO05D001868 2.8e-12 77.0 292 32.9
Manes.13G037900 Manihot esculenta HOM05D001861 ORTHO05D001868 3.6e-12 76.6 329 30.7
Thecc.04G261800 Theobroma cacao HOM05D001861 ORTHO05D001868 3.6e-12 76.6 341 30.2
MD13G1219300 Malus domestica HOM05D001861 ORTHO05D001868 4.7e-12 76.3 305 30.8
Prupe.8G218000 Prunus persica HOM05D001861 ORTHO05D001868 6.1e-12 75.9 311 33.8
TPR.G5651 Trifolium pratense HOM05D001861 ORTHO05D001868 6.1e-12 75.9 320 25.3
MSTRG.21470 Avicennia marina HOM05D001861 ORTHO05D001868 2.3e-11 73.9 334 28.4
Sed0022466 Sechium edule HOM05D001861 ORTHO05D001868 2.3e-11 73.9 295 25.8
Ciclev10020148m.g Citrus clementina HOM05D001861 ORTHO05D001868 4.0e-11 73.2 316 32.0
MBI07_g20245_MAGBIO Magnolia biondii HOM05D001861 ORTHO05D001868 4.0e-11 73.2 317 36.3
Actinidia37543 Actinidia chinensis HOM05D001861 ORTHO05D001868 6.8e-11 72.4 316 27.8
Duzib133G0752 Durio zibethinus HOM05D001861 ORTHO05D001868 6.8e-11 72.4 322 31.4
RcHm_v2.0_Chr4g0394781 Rosa chinensis HOM05D001861 ORTHO05D001868 8.9e-11 72.0 314 30.6
CANSAT78G0004 Cannabis sativa HOM05D001861 ORTHO05D001868 1.2e-10 71.6 296 30.7
QL09p040988 Quercus lobata HOM05D001861 ORTHO05D001868 1.2e-10 71.6 328 28.7
CiPaw.03G268800 Carya illinoinensis HOM05D001861 ORTHO05D001868 2.0e-10 70.9 326 29.4
VMungo0720G1440 Vigna mungo HOM05D001861 ORTHO05D001868 3.4e-10 70.1 308 30.2
CSS0015268 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 4.4e-10 69.7 331 29.9
Lj2A1144T90 Lonicera japonica HOM05D001861 ORTHO05D001868 4.4e-10 69.7 341 28.2
GSVIVG01028395001 Vitis vinifera HOM05D001861 ORTHO05D001868 4.4e-10 69.7 314 30.9
Actinidia30135 Actinidia chinensis HOM05D001861 ORTHO05D001868 5.7e-10 69.3 308 28.6
CANSAT01G1959 Cannabis sativa HOM05D001861 ORTHO05D001868 5.7e-10 69.3 336 30.4
Nn3g19746 Nelumbo nucifera HOM05D001861 ORTHO05D001868 5.7e-10 69.3 313 31.3
Phvul.001G163600 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 7.5e-10 68.9 311 30.2
COL.COLO4_15945 Corchorus olitorius HOM05D001861 ORTHO05D001868 1.3e-09 68.2 89 47.2
Hma1.2p1_0273F.1_g109330 Hydrangea macrophylla HOM05D001861 ORTHO05D001868 1.3e-09 68.2 326 25.5
SGA_v2.0_scaffold67G22706 Striga asiatica HOM05D001861 ORTHO05D001868 1.3e-09 68.2 290 28.6
Glyma.19G167200 Glycine max HOM05D001861 ORTHO05D001868 1.7e-09 67.8 333 27.3
Phvul.007G190400 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 1.7e-09 67.8 299 26.8
BcaC06g31659 Brassica carinata HOM05D001861 ORTHO05D001868 2.9e-09 67.0 121 40.5
Haze_24681 Corylus avellana HOM05D001861 ORTHO05D001868 2.9e-09 67.0 316 29.1
COL.COLO4_08951 Corchorus olitorius HOM05D001861 ORTHO05D001868 3.7e-09 66.6 325 27.1
Actinidia09524 Actinidia chinensis HOM05D001861 ORTHO05D001868 4.9e-09 66.2 307 27.7
Duzib138G0460 Durio zibethinus HOM05D001861 ORTHO05D001868 6.3e-09 65.9 313 32.9
Eucgr.A01357 Eucalyptus grandis HOM05D001861 ORTHO05D001868 6.3e-09 65.9 342 25.1
Thhalv10007735m.g Eutrema salsugineum HOM05D001861 ORTHO05D001868 6.3e-09 65.9 324 26.2
Glyma.20G201200 Glycine max HOM05D001861 ORTHO05D001868 6.3e-09 65.9 306 30.1
MD10G1178600 Malus domestica HOM05D001861 ORTHO05D001868 1.1e-08 65.1 105 42.9
Sopen09g028590 Solanum pennellii HOM05D001861 ORTHO05D001868 1.1e-08 65.1 333 31.5
vmacro02703 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 1.1e-08 65.1 108 40.7
Sabra10G0040100 Salix brachista HOM05D001861 ORTHO05D001868 1.4e-08 64.7 124 38.7
Glyma.03G166000 Glycine max HOM05D001861 ORTHO05D001868 1.8e-08 64.3 332 27.7
Solyc09g072800.3 Solanum lycopersicum HOM05D001861 ORTHO05D001868 1.8e-08 64.3 333 31.2
PGSC0003DMG400003789 Solanum tuberosum HOM05D001861 ORTHO05D001868 1.8e-08 64.3 327 30.6
Thecc.01G252900 Theobroma cacao HOM05D001861 ORTHO05D001868 2.4e-08 63.9 321 29.3
CAN.G1380.1 Capsicum annuum HOM05D001861 ORTHO05D001868 3.2e-08 63.5 329 24.3
Gohir.A11G132600 Gossypium hirsutum HOM05D001861 ORTHO05D001868 3.2e-08 63.5 320 25.3
Potri.002G258501 Populus trichocarpa HOM05D001861 ORTHO05D001868 4.1e-08 63.2 312 27.9
TWI75G1188 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 4.1e-08 63.2 313 39.3
VMungo1383G3726 Vigna mungo HOM05D001861 ORTHO05D001868 4.1e-08 63.2 314 24.8
Rhsim13G0039200 Rhododendron simsii HOM05D001861 ORTHO05D001868 5.4e-08 62.8 107 40.2
FAN15G3358 Fragaria x ananassa HOM05D001861 ORTHO05D001868 7.0e-08 62.4 92 40.2
AL8G16040 Arabidopsis lyrata HOM05D001861 ORTHO05D001868 1.6e-07 61.2 111 39.6
arahy.Tifrunner.gnm1.ann1.Z5JC91 Arachis hypogaea HOM05D001861 ORTHO05D001868 1.6e-07 61.2 97 39.2
Gohir.D11G138700 Gossypium hirsutum HOM05D001861 ORTHO05D001868 1.6e-07 61.2 319 25.7
Psat6g061640 Pisum sativum HOM05D001861 ORTHO05D001868 1.6e-07 61.2 335 24.2
SHI09722 Sapria himalayana HOM05D001861 ORTHO05D001868 1.6e-07 61.2 296 27.4
VMungo0720G0376 Vigna mungo HOM05D001861 ORTHO05D001868 1.6e-07 61.2 315 26.7
arahy.Tifrunner.gnm1.ann1.00X5DN Arachis hypogaea HOM05D001861 ORTHO05D001868 2.0e-07 60.8 308 23.4
Eucgr.H02966 Eucalyptus grandis HOM05D001861 ORTHO05D001868 2.0e-07 60.8 334 28.1
Gorai.007G148800 Gossypium raimondii HOM05D001861 ORTHO05D001868 2.7e-07 60.5 322 25.5
CiPaw.04G189000 Carya illinoinensis HOM05D001861 ORTHO05D001868 3.5e-07 60.1 314 28.7
AT5G44040 Arabidopsis thaliana HOM05D001861 ORTHO05D001868 4.6e-07 59.7 98 39.8
Dinv16385 Davidia involucrata HOM05D001861 ORTHO05D001868 4.6e-07 59.7 314 29.3
Psat6g117160 Pisum sativum HOM05D001861 ORTHO05D001868 4.6e-07 59.7 295 27.1
TWI12G0903 Tripterygium wilfordii HOM05D001861 ORTHO05D001868 4.6e-07 59.7 308 37.3
Lj5g0002325 Lotus japonicus HOM05D001861 ORTHO05D001868 5.9e-07 59.3 96 40.6
Sabra02G0196600 Salix brachista HOM05D001861 ORTHO05D001868 5.9e-07 59.3 317 30.3
BcaC06g34600 Brassica carinata HOM05D001861 ORTHO05D001868 7.8e-07 58.9 119 36.1
BolC7t43195H Brassica oleracea HOM05D001861 ORTHO05D001868 7.8e-07 58.9 119 36.1
AUR62008778 Chenopodium quinoa HOM05D001861 ORTHO05D001868 7.8e-07 58.9 101 36.6
Ca_09656_v3 Cicer arietinum L. HOM05D001861 ORTHO05D001868 7.8e-07 58.9 98 39.8
THA.LOC104815999 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 7.8e-07 58.9 303 26.1
GSVIVG01023442001 Vitis vinifera HOM05D001861 ORTHO05D001868 7.8e-07 58.9 115 37.4
DCAR_018512 Daucus carota HOM05D001861 ORTHO05D001868 1.0e-06 58.5 336 27.4
Medtr1g069610 Medicago truncatula HOM05D001861 ORTHO05D001868 1.0e-06 58.5 348 31.9
RhsimUnG0083600 Rhododendron simsii HOM05D001861 ORTHO05D001868 1.0e-06 58.5 104 41.3
Lj5g0016435 Lotus japonicus HOM05D001861 ORTHO05D001868 1.3e-06 58.2 335 25.4
RcHm_v2.0_Chr6g0287181 Rosa chinensis HOM05D001861 ORTHO05D001868 1.3e-06 58.2 94 36.2
Peaxi162Scf00415g00518 Petunia axillaris HOM05D001861 ORTHO05D001868 1.7e-06 57.8 338 26.3
SGA_v2.0_scaffold1G00642 Striga asiatica HOM05D001861 ORTHO05D001868 1.7e-06 57.8 94 40.4
THA.LOC104826049 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 1.7e-06 57.8 340 24.1
Atru.chr2.1000 Acer truncatum HOM05D001861 ORTHO05D001868 2.3e-06 57.4 116 33.6
COL.COLO4_15500 Corchorus olitorius HOM05D001861 ORTHO05D001868 2.3e-06 57.4 92 38.0
Thhalv10017083m.g Eutrema salsugineum HOM05D001861 ORTHO05D001868 2.3e-06 57.4 327 23.5
FAN12G4349 Fragaria x ananassa HOM05D001861 ORTHO05D001868 2.3e-06 57.4 308 32.5
Rhsim09G0135100 Rhododendron simsii HOM05D001861 ORTHO05D001868 2.3e-06 57.4 104 41.3
SalBow4G2393 Salvia bowleyana HOM05D001861 ORTHO05D001868 2.3e-06 57.4 126 31.7
C07p26660 Brassica napus HOM05D001861 ORTHO05D001868 2.9e-06 57.0 119 35.3
FAN22G2180 Fragaria x ananassa HOM05D001861 ORTHO05D001868 2.9e-06 57.0 307 31.6
Thecc.05G270000 Theobroma cacao HOM05D001861 ORTHO05D001868 2.9e-06 57.0 119 37.0
arahy.Tifrunner.gnm1.ann1.MP36QT Arachis hypogaea HOM05D001861 ORTHO05D001868 3.9e-06 56.6 103 38.8
FAN27G2922 Fragaria x ananassa HOM05D001861 ORTHO05D001868 3.9e-06 56.6 250 29.2
Lj1C72T4 Lonicera japonica HOM05D001861 ORTHO05D001868 3.9e-06 56.6 89 39.3
MBI10_g19242_MAGBIO Magnolia biondii HOM05D001861 ORTHO05D001868 3.9e-06 56.6 360 26.4
Sp1g02870 Schrenkiella parvula HOM05D001861 ORTHO05D001868 3.9e-06 56.6 320 25.0
TPR.G28843 Trifolium pratense HOM05D001861 ORTHO05D001868 3.9e-06 56.6 293 24.2
A06p47510 Brassica napus HOM05D001861 ORTHO05D001868 5.0e-06 56.2 116 36.2
Glyma.10G039500 Glycine max HOM05D001861 ORTHO05D001868 5.0e-06 56.2 294 27.6
Lalb_Chr21g0314071 Lupinus albus HOM05D001861 ORTHO05D001868 5.0e-06 56.2 350 24.9
Aqoxy5G00168 Aquilegia oxysepala HOM05D001861 ORTHO05D001868 6.6e-06 55.8 265 34.3
AT2G33400 Arabidopsis thaliana HOM05D001861 ORTHO05D001868 6.6e-06 55.8 309 22.0
Phvul.L002544 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 6.6e-06 55.8 298 28.2
Rhsim09G0134700 Rhododendron simsii HOM05D001861 ORTHO05D001868 6.6e-06 55.8 96 40.6
CARHR127410 Cardamine hirsuta HOM05D001861 ORTHO05D001868 8.6e-06 55.5 308 24.4
FvH4_4g04330 Fragaria vesca HOM05D001861 ORTHO05D001868 8.6e-06 55.5 308 32.1
FAN20G2565 Fragaria x ananassa HOM05D001861 ORTHO05D001868 8.6e-06 55.5 257 30.4
Nitab4.5_0002389g0030 Nicotiana tabacum HOM05D001861 ORTHO05D001868 8.6e-06 55.5 336 27.4
Oeu035746.1 Olea europaea HOM05D001861 ORTHO05D001868 8.6e-06 55.5 342 23.4
Rhsim09G0135500 Rhododendron simsii HOM05D001861 ORTHO05D001868 8.6e-06 55.5 104 39.4
RhsimUnG0155600 Rhododendron simsii HOM05D001861 ORTHO05D001868 8.6e-06 55.5 104 40.4


User provided reference genes

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