Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 1.7e-174 615.9 314 100.0
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 1.6e-169 599.4 314 97.8
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 2.0e-143 512.7 314 85.0
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 2.7e-132 475.7 298 81.9
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 4.7e-132 474.9 299 81.3
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 1.5e-122 443.4 235 95.7
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 8.0e-116 421.0 335 66.9
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 2.2e-105 386.3 317 65.6
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 1.9e-101 373.2 314 64.6
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 4.4e-98 362.1 318 61.0
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 9.5e-93 344.4 314 61.8
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 8.0e-92 341.3 314 60.8
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 3.2e-88 329.3 327 56.3
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 8.6e-86 321.2 326 53.4
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 1.1e-85 320.9 336 54.2
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 5.8e-82 308.5 330 53.3
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 5.8e-82 308.5 322 51.2
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 2.2e-81 306.6 326 51.5
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 8.3e-81 304.7 329 53.5
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.1e-80 304.3 319 54.2
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 6.6e-78 295.0 316 52.8
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 4.3e-77 292.4 328 51.5
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 4.7e-76 288.9 315 48.9
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 1.1e-75 287.7 324 49.4
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 3.1e-75 286.2 317 48.9
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 1.2e-74 284.3 325 48.9
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 2.0e-74 283.5 341 49.3
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 2.0e-74 283.5 322 52.2
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 2.0e-74 283.5 316 49.4
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 3.4e-74 282.7 315 49.2
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 4.4e-74 282.3 312 50.0
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 1.7e-73 280.4 320 51.6
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 1.7e-73 280.4 311 53.4
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 6.4e-73 278.5 325 48.9
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 6.4e-73 278.5 318 48.7
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.9e-72 276.9 318 49.4
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 1.2e-71 274.2 317 46.7
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.2e-71 274.2 322 50.0
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 1.2e-71 274.2 315 53.3
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.1e-71 273.5 318 49.1
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 4.6e-71 272.3 318 48.1
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 4.6e-71 272.3 317 49.2
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 3.0e-70 269.6 326 48.2
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.1e-69 267.7 326 48.2
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 1.5e-69 267.3 320 48.4
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 2.5e-69 266.5 325 47.7
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 4.3e-69 265.8 326 48.2
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 4.3e-69 265.8 324 47.5
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 7.3e-69 265.0 313 48.6
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 2.1e-68 263.5 341 47.5
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 3.6e-68 262.7 334 48.2
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.1e-67 261.2 322 46.9
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 1.1e-67 261.2 310 48.7
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 1.8e-67 260.4 321 48.0
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 3.1e-67 259.6 322 49.1
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 4.0e-67 259.2 323 46.4
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 5.2e-67 258.8 326 45.1
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 6.8e-67 258.5 322 44.4
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 8.9e-67 258.1 321 47.7
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 2.0e-66 256.9 330 46.7
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 2.0e-66 256.9 342 45.6
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 2.0e-66 256.9 330 46.4
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 2.6e-66 256.5 299 50.2
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 1.7e-65 253.8 323 48.6
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.7e-65 253.8 315 48.3
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 2.9e-65 253.1 307 47.2
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 1.1e-64 251.1 319 46.4
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 1.1e-64 251.1 326 46.6
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 1.4e-64 250.8 328 47.6
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 5.4e-64 248.8 323 43.7
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 7.1e-64 248.4 321 46.7
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 1.2e-63 247.7 320 43.8
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 3.5e-63 246.1 318 43.1
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 2.3e-62 243.4 308 44.5
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 3.9e-62 242.7 315 42.9
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 5.1e-62 242.3 319 42.9
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 6.6e-62 241.9 323 44.9
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 6.6e-62 241.9 323 44.9
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 1.5e-61 240.7 317 47.0
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 5.6e-61 238.8 322 42.2
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 5.6e-61 238.8 317 47.0
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 5.6e-61 238.8 324 45.1
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 1.6e-60 237.3 329 45.3
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 3.6e-60 236.1 316 47.2
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 1.1e-59 234.6 324 42.0
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 1.8e-59 233.8 324 42.3
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 3.1e-59 233.0 323 44.0
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 5.3e-59 232.3 322 41.3
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 1.5e-58 230.7 319 42.0
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 9.9e-58 228.0 199 58.8
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 8.4e-57 224.9 318 45.0
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 2.3e-54 216.9 320 44.7
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 3.9e-54 216.1 306 45.1
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 8.7e-54 214.9 314 44.6
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 1.9e-53 213.8 304 41.8
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 2.1e-52 210.3 313 43.5
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 6.2e-52 208.8 322 39.8
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 1.1e-51 208.0 302 45.4
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 3.5e-47 193.0 278 40.6
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 6.7e-46 188.7 186 55.9
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 5.6e-45 185.7 181 54.7
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 2.4e-43 180.3 332 41.9
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 3.9e-38 162.9 397 30.5
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 7.6e-34 148.7 180 45.0
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 3.2e-32 143.3 299 33.4
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 3.2e-32 143.3 316 35.1
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 7.9e-31 138.7 137 52.6
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 1.1e-29 134.8 348 31.6
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.8e-27 127.5 311 32.8
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.7e-25 120.9 313 32.6
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 6.1e-23 112.5 142 47.2
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 3.7e-20 103.2 89 58.4
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 8.2e-20 102.1 162 40.1
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 1.5e-18 97.8 400 25.5
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 4.5e-18 96.3 195 34.9
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 5.5e-16 89.4 73 61.6
Cc08_g04640 Coffea canephora HOM05D006207 ORTHO05D007868 8.8e-14 82.0 82 59.8
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 1.1e-13 81.6 78 52.6
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 3.7e-12 76.6 79 49.4
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 2.4e-11 73.9 78 53.8
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 3.1e-11 73.6 349 23.8
SalBow1G6530 Salvia bowleyana HOM05D006207 ORTHO05D007868 2.0e-10 70.9 104 42.3
VMungo1309G1345 Vigna mungo HOM05D006207 ORTHO05D007868 3.2e-08 63.5 70 41.4
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 4.7e-07 59.7 42 73.8


User provided reference genes

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