Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.1e-104 383.3 190 100.0
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 3.2e-35 152.5 89 87.6
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 3.2e-35 152.5 89 87.6
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 3.5e-34 149.1 89 85.4
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 4.8e-31 138.7 103 72.8
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 2.1e-26 123.2 89 74.2
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 3.9e-25 119.0 90 74.4
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 5.1e-25 118.6 90 73.3
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 4.3e-16 89.0 104 51.0
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 7.4e-16 88.2 82 51.2
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 9.7e-16 87.8 104 51.0
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 9.7e-16 87.8 104 51.0
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 9.7e-16 87.8 93 50.5
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 9.7e-16 87.8 82 51.2
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 9.7e-16 87.8 82 51.2
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 2.8e-15 86.3 50 76.0
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 8.2e-15 84.7 46 73.9
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 6.9e-14 81.6 47 76.6
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 6.9e-14 81.6 93 53.8
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 1.5e-13 80.5 104 49.0
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 4.5e-13 79.0 104 48.1
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 5.9e-13 78.6 104 50.0
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 5.9e-13 78.6 104 45.2
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.3e-12 77.4 50 60.0
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 1.3e-12 77.4 104 46.2
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 2.2e-12 76.6 103 44.7
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 2.9e-12 76.3 50 60.0
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 2.9e-12 76.3 82 50.0
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 2.9e-12 76.3 50 62.0
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 5.0e-12 75.5 50 58.0
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 8.5e-12 74.7 126 42.1
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 8.5e-12 74.7 50 58.0
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 1.1e-11 74.3 59 49.2
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 1.1e-11 74.3 50 58.0
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 1.4e-11 73.9 103 44.7
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 1.4e-11 73.9 92 40.2
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 1.9e-11 73.6 104 44.2
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 1.9e-11 73.6 103 40.8
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 1.9e-11 73.6 50 58.0
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 1.9e-11 73.6 104 51.0
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 2.5e-11 73.2 104 46.2
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 2.5e-11 73.2 50 56.0
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.2e-11 72.8 50 56.0
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.2e-11 72.8 50 56.0
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 3.2e-11 72.8 55 50.9
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 3.2e-11 72.8 50 54.0
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 4.2e-11 72.4 50 56.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 4.2e-11 72.4 50 58.0
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 5.5e-11 72.0 103 44.7
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 5.5e-11 72.0 56 51.8
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 1.2e-10 70.9 104 44.2
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.2e-10 70.9 93 39.8
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 1.2e-10 70.9 50 54.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.6e-10 70.5 50 52.0
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 1.6e-10 70.5 49 55.1
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.7e-10 69.7 50 56.0
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 2.7e-10 69.7 50 56.0
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 2.7e-10 69.7 117 34.2
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 2.7e-10 69.7 104 43.3
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 3.6e-10 69.3 104 47.1
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 4.7e-10 68.9 50 50.0
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 4.7e-10 68.9 104 43.3
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 4.7e-10 68.9 106 44.3
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 6.1e-10 68.6 50 56.0
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 6.1e-10 68.6 50 56.0
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 6.1e-10 68.6 50 56.0
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 7.9e-10 68.2 104 43.3
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 7.9e-10 68.2 104 42.3
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 1.0e-09 67.8 50 52.0
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 1.0e-09 67.8 50 50.0
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 1.0e-09 67.8 50 50.0
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 1.8e-09 67.0 90 47.8
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 1.8e-09 67.0 50 52.0
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 1.8e-09 67.0 50 48.0
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 1.8e-09 67.0 50 52.0
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 2.3e-09 66.6 93 36.6
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 3.0e-09 66.2 104 47.1
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 3.0e-09 66.2 87 49.4
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 3.9e-09 65.9 50 50.0
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 3.9e-09 65.9 50 48.0
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 3.9e-09 65.9 51 49.0
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 5.1e-09 65.5 87 47.1
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 5.1e-09 65.5 50 52.0
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 6.7e-09 65.1 50 48.0
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 6.7e-09 65.1 56 46.4
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 6.7e-09 65.1 103 42.7
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 8.8e-09 64.7 46 52.2
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 1.1e-08 64.3 60 45.0
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 48.0
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 48.0
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 48.0
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 48.0
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 48.0
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 50.0
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 48.0
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 48.0
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 46.0
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 48.0
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 1.5e-08 63.9 104 46.2
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 1.5e-08 63.9 50 46.0
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 2.0e-08 63.5 56 42.9
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 2.0e-08 63.5 51 45.1
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 2.0e-08 63.5 46 52.2
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 2.0e-08 63.5 50 48.0
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 2.0e-08 63.5 50 50.0
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 2.0e-08 63.5 51 43.1
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 2.6e-08 63.2 50 48.0
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 2.6e-08 63.2 50 48.0
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 2.6e-08 63.2 99 44.4
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 2.6e-08 63.2 50 50.0
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 2.6e-08 63.2 93 47.3
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 2.6e-08 63.2 50 44.0
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 3.3e-08 62.8 50 44.0
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 3.3e-08 62.8 118 37.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 3.3e-08 62.8 93 38.7
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 3.3e-08 62.8 50 46.0
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 3.3e-08 62.8 95 43.2
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 4.4e-08 62.4 88 34.1
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 4.4e-08 62.4 50 46.0
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 4.4e-08 62.4 93 38.7
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 5.7e-08 62.0 51 45.1
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 5.7e-08 62.0 118 41.5
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 7.4e-08 61.6 50 48.0
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 7.4e-08 61.6 88 39.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 7.4e-08 61.6 50 46.0
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 7.4e-08 61.6 92 39.1
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 9.7e-08 61.2 89 44.9
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 9.7e-08 61.2 104 40.4
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 9.7e-08 61.2 50 48.0
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 1.3e-07 60.8 47 46.8
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 1.7e-07 60.5 56 41.1
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 1.7e-07 60.5 47 46.8
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 1.7e-07 60.5 51 43.1
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 1.7e-07 60.5 50 46.0
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 1.7e-07 60.5 90 44.4
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 2.2e-07 60.1 104 38.5
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 2.2e-07 60.1 50 44.0
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 2.2e-07 60.1 95 43.2
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 4.8e-07 58.9 47 46.8
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 4.8e-07 58.9 93 37.6
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.8e-07 58.9 93 37.6
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.8e-07 58.9 93 37.6
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.8e-07 58.9 93 37.6
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 6.3e-07 58.5 118 35.6
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 6.3e-07 58.5 118 35.6
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 8.2e-07 58.2 50 44.0
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 8.2e-07 58.2 118 35.6
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 8.2e-07 58.2 75 50.7
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.1e-06 57.8 50 46.0
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 1.1e-06 57.8 95 42.1
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 1.1e-06 57.8 104 39.4
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 1.1e-06 57.8 104 39.4
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 1.4e-06 57.4 90 44.4
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 1.4e-06 57.4 118 35.6
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 1.4e-06 57.4 51 43.1
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 1.8e-06 57.0 120 37.5
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 1.8e-06 57.0 50 44.0
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 1.8e-06 57.0 134 35.8
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 1.8e-06 57.0 103 41.7
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 1.8e-06 57.0 105 38.1
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 1.8e-06 57.0 92 46.7
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 1.8e-06 57.0 103 40.8
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 2.4e-06 56.6 120 38.3
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 2.4e-06 56.6 104 41.3
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 2.4e-06 56.6 90 43.3
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 2.4e-06 56.6 95 40.0
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.4e-06 56.6 50 42.0
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 3.1e-06 56.2 118 34.7
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 4.1e-06 55.8 89 43.8
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 5.3e-06 55.5 50 44.0
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 5.3e-06 55.5 62 33.9
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 5.3e-06 55.5 104 37.5
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 5.3e-06 55.5 104 37.5
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 7.0e-06 55.1 65 35.4
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 7.0e-06 55.1 118 33.9
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 9.1e-06 54.7 134 36.6
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 9.1e-06 54.7 75 48.0
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 9.1e-06 54.7 168 23.8


User provided reference genes

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