Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.8e-70 268.5 133 100.0
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.8e-70 268.5 133 100.0
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 2.6e-31 139.0 134 56.0
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.6e-28 129.8 138 51.4
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 5.9e-28 127.9 143 52.4
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 2.2e-27 125.9 129 56.6
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 7.2e-26 120.9 138 50.7
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 3.6e-25 118.6 133 50.4
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.0e-24 117.1 135 48.1
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.0e-24 117.1 126 50.8
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.8e-24 116.3 138 46.4
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 2.3e-24 115.9 127 51.2
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 3.0e-24 115.5 140 49.3
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 7.5e-23 110.9 121 52.9
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.3e-22 110.2 124 50.0
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 2.2e-22 109.4 126 48.4
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 3.7e-22 108.6 120 53.3
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 3.7e-22 108.6 125 49.6
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.4e-21 106.7 137 44.5
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 1.4e-21 106.7 130 49.2
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.8e-21 106.3 137 44.5
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 4.1e-21 105.1 138 40.6
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 7.0e-21 104.4 135 48.9
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.6e-20 103.2 121 47.1
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.6e-20 103.2 121 47.1
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 2.7e-20 102.4 103 53.4
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.7e-20 102.4 136 42.6
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 2.7e-20 102.4 130 48.5
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.5e-20 102.1 129 47.3
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 3.5e-20 102.1 136 43.4
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 5.9e-20 101.3 136 43.4
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 7.7e-20 100.9 136 42.6
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.7e-20 100.9 137 41.6
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.3e-19 100.1 127 48.8
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.3e-19 100.1 133 41.4
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 1.7e-19 99.8 132 46.2
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.7e-19 99.8 136 41.2
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.7e-19 99.8 136 41.2
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.3e-19 99.4 135 45.9
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 3.8e-19 98.6 133 45.1
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 5.0e-19 98.2 102 51.0
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.1e-18 97.1 138 46.4
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 1.5e-18 96.7 121 46.3
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.5e-18 95.9 138 41.3
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.3e-18 95.5 132 47.0
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.2e-18 94.4 134 47.8
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 7.2e-18 94.4 123 47.2
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 7.2e-18 94.4 108 49.1
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.6e-17 93.2 134 42.5
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 2.8e-17 92.4 131 42.7
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 6.1e-17 91.3 133 44.4
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 8.0e-17 90.9 145 41.4
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 8.0e-17 90.9 108 47.2
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 8.0e-17 90.9 132 39.4
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 8.0e-17 90.9 124 46.0
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 8.0e-17 90.9 118 44.1
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.4e-16 90.1 132 43.9
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 1.4e-16 90.1 122 40.2
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 1.8e-16 89.7 123 41.5
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 1.8e-16 89.7 123 41.5
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 4.0e-16 88.6 142 38.7
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.2e-16 88.2 126 39.7
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.2e-15 87.0 136 36.8
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 2.6e-15 85.9 136 41.2
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.4e-15 85.5 129 39.5
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 3.4e-15 85.5 126 44.4
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 3.4e-15 85.5 126 44.4
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.7e-15 84.7 120 42.5
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 7.5e-15 84.3 122 39.3
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 9.8e-15 84.0 118 44.9
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 9.8e-15 84.0 118 44.9
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-14 83.6 117 41.0
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 1.7e-14 83.2 118 43.2
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.2e-14 82.8 120 41.7
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.7e-14 82.0 108 47.2
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 1.4e-13 80.1 107 46.7
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 2.4e-13 79.3 121 41.3
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.4e-13 79.3 109 40.4
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 4.1e-13 78.6 121 42.1
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 7.0e-13 77.8 140 40.0
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 7.0e-13 77.8 135 40.0
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.2e-12 77.0 108 43.5
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 1.2e-12 77.0 124 37.9
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.2e-12 77.0 127 35.4
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 1.6e-12 76.6 125 42.4
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.0e-12 76.3 123 39.8
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.7e-12 75.9 134 40.3
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 2.7e-12 75.9 122 39.3
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 3.5e-12 75.5 142 35.9
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.5e-12 75.5 120 46.7
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 3.5e-12 75.5 127 33.9
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 3.5e-12 75.5 107 43.0
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 3.5e-12 75.5 106 43.4
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 4.5e-12 75.1 134 35.1
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.9e-12 74.7 125 35.2
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 7.8e-12 74.3 118 34.7
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.0e-11 73.9 137 35.0
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.3e-11 73.6 121 38.8
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 1.3e-11 73.6 119 38.7
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 1.7e-11 73.2 123 37.4
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 1.7e-11 73.2 106 44.3
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.7e-11 73.2 125 39.2
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 2.9e-11 72.4 118 36.4
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 5.0e-11 71.6 112 36.6
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 5.0e-11 71.6 120 37.5
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 5.0e-11 71.6 124 33.1
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 6.6e-11 71.2 115 42.6
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 6.6e-11 71.2 106 40.6
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.5e-10 70.1 109 45.0
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 1.9e-10 69.7 124 38.7
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 2.5e-10 69.3 146 34.2
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 2.5e-10 69.3 146 34.2
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 2.5e-10 69.3 126 39.7
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.6e-10 68.2 114 33.3
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 7.3e-10 67.8 125 40.8
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 9.5e-10 67.4 126 34.1
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 9.5e-10 67.4 130 33.8
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 1.2e-09 67.0 126 40.5
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 2.1e-09 66.2 122 38.5
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.8e-09 65.9 123 32.5
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 3.6e-09 65.5 114 33.3
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 3.6e-09 65.5 123 34.1
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.1e-09 64.7 124 38.7
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 8.0e-09 64.3 127 35.4
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 1.0e-08 63.9 104 34.6
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 1.4e-08 63.5 127 37.8
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 1.4e-08 63.5 104 35.6
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 1.4e-08 63.5 105 40.0
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 1.8e-08 63.2 111 30.6
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 1.8e-08 63.2 111 30.6
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.8e-08 63.2 126 33.3
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.9e-08 60.8 128 32.8
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 1.2e-07 60.5 125 34.4
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.2e-07 60.5 128 32.8
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.2e-07 60.5 128 32.8
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.2e-07 60.5 128 32.8
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.2e-07 60.5 128 32.8
SEGI_18478 Sequoiadendron giganteum HOM05D026807 ORTHO05D004417 1.2e-07 60.5 123 34.1
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 2.0e-07 59.7 105 40.0
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 3.4e-07 58.9 128 32.0
PGSC0003DMG400036326 Solanum tuberosum HOM05D004062 ORTHO05D004417 4.4e-07 58.5 110 38.2
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 9.8e-07 57.4 130 31.5
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.4e-06 54.7 126 34.9
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 8.3e-06 54.3 118 33.1


User provided reference genes

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