Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 3.2e-153 545.0 277 100.0
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.1e-150 536.6 277 98.6
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.0e-135 486.9 276 89.1
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 1.8e-135 486.1 277 89.9
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 7.0e-132 474.2 277 86.3
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.6e-131 473.0 279 86.4
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.4e-116 421.4 257 82.5
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 2.1e-107 392.9 268 72.0
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 8.6e-106 387.5 270 69.3
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 2.0e-94 349.7 261 65.9
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 2.9e-93 345.9 270 64.4
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 3.2e-92 342.4 260 68.1
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 3.2e-92 342.4 278 62.6
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 4.2e-92 342.0 259 64.9
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 7.1e-92 341.3 276 62.0
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.0e-90 335.9 277 61.7
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 5.6e-89 331.6 269 62.8
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 2.0e-86 323.2 276 54.7
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 2.6e-86 322.8 238 68.1
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 8.4e-85 317.8 260 62.7
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.1e-84 317.4 265 60.4
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 1.9e-84 316.6 277 56.7
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.7e-83 312.8 279 59.1
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 5.1e-82 308.5 268 57.5
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 8.7e-82 307.8 260 62.7
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.1e-81 307.4 268 57.5
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.9e-81 306.6 264 57.2
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 2.5e-81 306.2 264 57.2
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 2.5e-81 306.2 275 57.1
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 9.6e-81 304.3 274 57.7
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 9.6e-81 304.3 278 55.8
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.8e-80 302.8 255 57.3
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.8e-80 302.8 276 54.3
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 2.8e-80 302.8 274 56.6
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 3.6e-80 302.4 264 60.2
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 3.6e-80 302.4 274 55.5
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 6.2e-80 301.6 272 56.2
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.1e-79 300.8 276 54.0
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 6.9e-79 298.1 275 54.5
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 9.0e-79 297.7 275 54.5
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 9.0e-79 297.7 276 54.3
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.2e-78 297.4 260 58.5
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.5e-78 297.0 263 56.3
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 4.5e-78 295.4 254 57.9
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 4.5e-78 295.4 264 55.7
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.3e-77 293.9 274 51.8
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 4.9e-77 292.0 277 54.2
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 6.4e-77 291.6 275 54.2
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 8.4e-77 291.2 276 55.1
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.6e-75 287.0 274 55.1
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 3.5e-75 285.8 254 56.3
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 7.9e-75 284.6 262 55.3
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.3e-74 283.9 258 56.2
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 6.7e-74 281.6 277 52.3
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 8.7e-74 281.2 258 56.6
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 1.9e-73 280.0 254 55.1
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.3e-73 279.3 230 58.3
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 7.4e-73 278.1 277 51.3
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 7.4e-73 278.1 271 52.4
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 9.6e-73 277.7 276 52.5
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 9.6e-73 277.7 266 54.1
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 2.8e-72 276.2 253 54.2
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 3.7e-72 275.8 253 54.2
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.1e-71 274.2 261 51.7
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 3.1e-71 272.7 274 49.6
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.2e-70 270.8 254 53.5
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.5e-70 270.4 258 50.4
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.5e-70 270.4 260 54.2
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 2.6e-70 269.6 263 52.5
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 7.6e-70 268.1 257 54.9
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 2.9e-69 266.2 254 52.0
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 3.8e-69 265.8 274 52.2
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 4.9e-69 265.4 259 50.6
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 1.9e-68 263.5 250 50.4
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 3.2e-68 262.7 253 53.8
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 4.2e-68 262.3 272 50.0
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 5.5e-68 261.9 253 50.6
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 7.1e-68 261.5 256 53.5
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.5e-67 259.2 260 51.2
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.6e-67 258.8 260 51.2
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.3e-66 257.3 260 50.4
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 1.8e-66 256.9 278 50.0
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 3.0e-66 256.1 260 50.8
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 3.0e-66 256.1 253 51.8
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.7e-66 254.6 260 50.4
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.3e-65 252.3 266 49.6
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 2.8e-64 249.6 256 47.7
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 1.4e-63 247.3 247 54.3
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.6e-62 243.0 266 51.1
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 4.3e-57 225.7 270 45.2
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 8.2e-56 221.5 258 44.6
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 1.8e-55 220.3 267 44.9
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 2.0e-54 216.9 258 44.2
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 1.3e-53 214.2 258 43.4
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 2.5e-52 209.9 122 82.8
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 3.0e-50 203.0 249 39.8
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 2.6e-49 199.9 245 40.8
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.3e-48 197.6 247 38.9
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 2.8e-48 196.4 152 65.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 4.8e-48 195.7 276 42.0
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.4e-47 193.4 253 42.7
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 9.1e-47 191.4 279 41.2
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 9.1e-47 191.4 273 42.5
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 2.0e-46 190.3 214 49.5
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 4.5e-46 189.1 277 39.7
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 4.5e-46 189.1 277 39.7
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 4.5e-46 189.1 277 39.7
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 4.5e-46 189.1 177 49.7
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.0e-45 188.0 277 39.7
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 2.9e-45 186.4 230 45.2
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 3.8e-45 186.0 253 40.7
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 5.0e-45 185.7 167 53.9
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.5e-44 183.3 281 41.3
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 5.5e-44 182.2 279 39.4
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 5.2e-42 175.6 257 40.5
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.3e-37 161.0 258 40.3
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 2.7e-35 153.3 250 34.8
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.4e-34 151.0 169 43.2
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 8.8e-34 148.3 277 37.2
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.8e-31 140.6 119 54.6
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 1.0e-29 134.8 269 29.4
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 5.5e-28 129.0 89 62.9
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 8.0e-27 125.2 250 32.4
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.8e-26 124.0 92 65.2
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 4.0e-26 122.9 274 33.6
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-25 121.3 123 48.8
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.0e-25 120.6 140 47.1
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 8.3e-24 115.2 203 36.9
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 2.5e-20 103.6 269 29.4
Solyc04g026000.2 Solanum lycopersicum HOM05D003570 ORTHO05D004207 2.5e-20 103.6 133 51.1
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 6.1e-19 99.0 190 32.6
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 4.0e-18 96.3 94 47.9
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.0e-17 94.0 120 43.3
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 4.4e-17 92.8 183 33.3
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.2e-16 90.5 71 66.2
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.7e-16 89.7 85 51.8
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 3.1e-15 86.7 108 46.3
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 5.9e-14 82.4 75 60.0
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 5.0e-13 79.3 72 55.6
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 8.6e-13 78.6 121 34.7
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 2.8e-11 73.6 49 65.3
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 6.1e-11 72.4 49 65.3
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 3.4e-09 66.6 100 34.0
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.2e-07 60.1 62 48.4
CAN.G189.38 Capsicum annuum HOM05D003570 ORTHO05D004207 5.4e-07 59.3 54 55.6
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 9.2e-07 58.5 49 57.1


User provided reference genes

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