Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.7e-255 884.8 441 100.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-167 592.4 293 99.7
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-167 592.4 293 99.7
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-167 592.4 293 99.7
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.2e-159 566.2 295 96.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 7.2e-155 551.2 293 93.5
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.7e-154 549.3 293 94.2
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.7e-154 549.3 293 94.2
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.7e-154 549.3 293 94.2
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 6.1e-154 548.1 296 93.2
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.0e-153 547.4 294 93.2
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.0e-153 547.4 294 93.2
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.3e-153 546.2 293 93.2
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.3e-153 546.2 293 93.2
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.7e-153 544.7 294 93.5
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.0e-152 543.1 293 92.5
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 9.7e-152 540.8 293 92.5
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.8e-150 536.6 294 91.2
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.4e-150 536.2 293 92.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 9.1e-150 534.3 294 90.8
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.6e-146 523.5 293 91.5
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-144 516.9 294 90.5
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-144 516.9 294 90.5
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-144 516.9 294 90.5
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-144 516.9 294 90.5
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.3e-144 515.8 293 89.8
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 3.3e-144 515.8 294 89.1
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 7.4e-144 514.6 293 89.4
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 9.7e-144 514.2 293 89.4
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.8e-142 510.0 297 89.2
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.4e-142 509.6 281 92.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 2.4e-142 509.6 294 90.1
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 7.0e-142 508.1 251 99.6
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 7.0e-142 508.1 251 99.6
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 7.0e-142 508.1 293 88.1
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 5.9e-141 505.0 294 88.1
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.9e-140 502.7 294 88.8
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 3.2e-139 499.2 254 97.2
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.8e-137 493.4 254 97.2
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 6.3e-135 485.0 251 96.0
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 9.1e-134 481.1 295 86.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 9.1e-134 481.1 295 86.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 9.1e-134 481.1 295 86.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 9.1e-134 481.1 295 86.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 9.1e-134 481.1 295 86.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 9.1e-134 481.1 295 86.4
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 2.9e-132 476.1 254 94.1
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-130 469.9 301 83.1
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 3.4e-128 462.6 281 85.1
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 4.4e-128 462.2 293 82.3
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.1e-126 455.7 254 90.9
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-123 446.0 270 86.3
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.2e-117 427.6 239 92.5
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 2.0e-117 426.8 233 93.1
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 2.0e-117 426.8 233 93.1
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.0e-117 426.8 260 85.0
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.5e-117 425.6 290 77.2
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 7.8e-117 424.9 264 83.7
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 3.9e-116 422.5 303 76.9
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 5.0e-116 422.2 233 92.7
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.3e-115 419.5 233 91.8
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 5.6e-115 418.7 233 91.8
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.1e-114 416.8 294 76.5
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.4e-112 409.5 261 82.4
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-104 382.5 251 77.7
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 2.7e-101 373.2 195 96.4
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 9.5e-99 364.8 207 90.3
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 2.3e-97 360.1 247 80.2
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.5e-91 340.9 190 91.6
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 2.4e-89 333.6 181 94.5
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.0e-89 332.8 180 91.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.1e-86 324.7 296 63.2
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 8.1e-74 282.0 144 95.1
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.1e-73 281.6 222 69.4
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 9.0e-73 278.5 171 85.4
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.2e-70 270.0 149 88.6
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 5.4e-70 269.2 198 74.7
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 2.5e-67 260.4 153 85.6
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.1e-65 255.0 138 92.0
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.2e-64 251.5 136 94.1
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-64 251.1 144 88.2
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 3.8e-63 246.5 146 87.7
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-62 243.4 143 86.7
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-62 243.4 143 86.7
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-61 241.1 132 87.9
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.1e-60 236.1 120 96.7
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.6e-58 231.1 122 96.7
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 6.2e-58 229.2 150 83.3
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.0e-57 225.3 120 93.3
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-56 224.9 124 91.1
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.5e-56 224.6 216 56.9
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.9e-54 217.6 130 84.6
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 3.3e-51 206.8 116 91.4
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 5.7e-51 206.1 127 80.3
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.2e-50 204.1 112 88.4
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-49 201.8 122 85.2
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.0e-48 197.6 123 82.9
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.4e-48 196.8 118 84.7
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.5e-46 190.7 227 50.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 9.4e-46 188.7 251 47.4
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.1e-45 187.6 227 50.2
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.1e-45 186.0 118 81.4
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 6.7e-44 182.6 243 53.5
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 2.8e-42 177.2 115 78.3
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-41 174.1 91 95.6
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 7.7e-40 169.1 96 90.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.0e-36 158.7 294 39.1
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 7.4e-35 152.5 75 97.3
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 3.5e-32 143.7 80 88.8
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.8e-31 140.2 90 80.0
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 8.5e-31 139.0 67 94.0
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.1e-30 138.7 66 95.5
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-30 138.7 66 95.5
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-30 138.7 66 95.5
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.1e-30 138.7 66 95.5
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 4.2e-30 136.7 65 98.5
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 5.5e-30 136.3 67 92.5
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 2.7e-29 134.0 245 38.4
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 8.0e-29 132.5 62 96.8
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 8.0e-29 132.5 62 96.8
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 8.0e-29 132.5 62 96.8
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 8.0e-29 132.5 62 96.8
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 8.8e-28 129.0 144 51.4
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-27 128.6 183 49.2
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 6.3e-26 122.9 144 49.3
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 8.2e-26 122.5 95 69.5
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-25 122.1 62 95.2
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.2e-24 118.6 55 96.4
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.2e-24 118.6 55 96.4
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.6e-24 118.2 82 75.6
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 4.5e-24 116.7 144 46.5
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.0e-23 113.2 74 79.7
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 4.2e-22 110.2 62 80.6
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 7.5e-19 99.4 97 56.7
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 3.7e-18 97.1 49 93.9
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.4e-17 93.2 115 49.6
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.9e-15 87.4 48 85.4
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.5e-15 86.3 146 40.4
PGSC0003DMG400047287 Solanum tuberosum HOM05D009555 ORTHO05D004568 2.5e-14 84.3 99 50.5
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 4.2e-14 83.6 60 76.7
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 3.6e-13 80.5 67 61.2
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-12 78.6 51 78.4
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-12 78.6 51 78.4
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 3.0e-12 77.4 60 73.3
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.0e-12 77.4 49 77.6
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 4.0e-12 77.0 65 66.2
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 6.8e-12 76.3 52 75.0
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-11 75.5 63 60.3
PGSC0003DMG400034926 Solanum tuberosum HOM05D007862 ORTHO05D009935 3.4e-11 73.9 73 57.5
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 9.8e-11 72.4 54 70.4
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 2.8e-10 70.9 68 52.9
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.9e-10 70.1 37 83.8
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 4.1e-09 67.0 53 64.2
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 9.2e-09 65.9 34 85.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-08 65.5 47 72.3
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 2.0e-08 64.7 37 89.2
PGSC0003DMG400037931 Solanum tuberosum HOM05D009555 ORTHO05D397602 1.7e-07 61.6 71 47.9
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 3.8e-07 60.5 28 96.4
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.5e-06 57.8 48 66.7
Nitab4.5_0000172g1260 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.3e-06 57.0 27 96.3


User provided reference genes

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