Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 5.0e-218 760.8 372 100.0
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 7.3e-209 730.3 381 95.0
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 3.1e-207 724.9 382 94.0
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 1.1e-156 557.0 351 78.6
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 3.5e-134 482.3 332 72.9
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 7.0e-119 431.4 342 61.7
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 4.2e-116 422.2 304 66.8
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 2.7e-110 402.9 343 57.1
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.3e-109 400.6 356 57.3
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 1.7e-109 400.2 302 61.9
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 5.0e-109 398.7 350 58.3
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 4.7e-107 392.1 325 59.1
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 8.0e-107 391.3 284 66.2
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 1.0e-106 391.0 282 67.0
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 5.2e-106 388.7 301 62.8
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 1.5e-105 387.1 352 57.1
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 1.5e-105 387.1 294 62.9
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 2.6e-105 386.3 322 60.2
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 2.6e-105 386.3 294 62.9
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 2.6e-105 386.3 317 58.4
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.4e-105 385.6 329 56.8
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 4.4e-105 385.6 372 55.1
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 5.7e-105 385.2 294 62.9
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 7.5e-105 384.8 341 55.1
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 7.5e-105 384.8 321 58.9
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 2.9e-104 382.9 374 54.5
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 4.9e-104 382.1 326 56.4
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 4.9e-104 382.1 353 55.0
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 6.4e-104 381.7 352 55.4
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 1.4e-103 380.6 350 54.0
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 4.1e-103 379.0 347 55.6
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 5.4e-103 378.6 297 61.6
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 5.4e-103 378.6 367 53.1
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 9.2e-103 377.9 318 58.5
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 9.2e-103 377.9 374 54.5
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 2.0e-102 376.7 323 57.3
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 2.0e-102 376.7 311 57.2
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 7.8e-102 374.8 346 58.1
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 1.7e-101 373.6 300 59.3
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 6.6e-101 371.7 302 58.9
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 8.6e-101 371.3 317 56.8
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 1.1e-100 370.9 302 57.3
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 1.5e-100 370.5 334 57.2
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 7.3e-100 368.2 322 54.7
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 9.5e-100 367.9 373 51.5
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 3.6e-99 365.9 299 61.5
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 8.0e-99 364.8 312 56.4
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 1.0e-98 364.4 333 53.2
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 1.8e-98 363.6 334 56.3
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 2.3e-98 363.2 336 55.7
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 6.8e-98 361.7 348 53.2
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 3.4e-97 359.4 363 54.3
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 3.4e-97 359.4 347 56.5
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 4.9e-96 355.5 346 56.1
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 8.3e-96 354.8 318 57.5
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.1e-95 354.4 302 55.3
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 1.1e-95 354.4 301 56.5
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 2.4e-95 353.2 307 56.0
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 9.2e-95 351.3 385 48.3
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 1.2e-94 350.9 315 58.4
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 1.2e-94 350.9 306 56.9
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.2e-94 350.9 323 52.6
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 1.3e-93 347.4 301 56.1
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 1.3e-93 347.4 334 53.6
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 2.3e-93 346.7 325 53.2
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 6.6e-93 345.1 303 54.8
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 1.5e-92 344.0 311 52.4
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 9.5e-92 341.3 324 52.5
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 3.6e-91 339.3 320 52.2
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 4.7e-91 339.0 301 54.8
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 1.1e-90 337.8 315 54.0
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 5.2e-90 335.5 295 54.9
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 2.6e-89 333.2 314 54.1
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 9.8e-89 331.3 316 54.4
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 2.9e-88 329.7 296 54.4
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 2.9e-88 329.7 296 54.4
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 1.1e-87 327.8 338 51.2
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 4.1e-87 325.9 330 52.1
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 2.7e-86 323.2 292 56.5
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 1.7e-85 320.5 424 46.0
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 3.0e-85 319.7 376 46.5
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 1.5e-84 317.4 313 52.7
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 1.9e-84 317.0 242 61.2
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 1.2e-83 314.3 311 51.8
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 5.2e-82 308.9 255 59.6
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 1.1e-79 301.2 282 55.0
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 1.0e-77 294.7 370 41.6
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 1.5e-76 290.8 324 48.5
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 3.1e-74 283.1 290 52.4
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 9.3e-71 271.6 325 46.5
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 9.6e-68 261.5 316 45.6
Hma1.2p1_0271F.1_g108750 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.1e-58 229.9 158 66.5
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 1.3e-56 224.6 322 38.5
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 4.2e-55 219.5 345 36.2
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 8.7e-53 211.8 309 37.5
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 2.4e-50 203.8 172 56.4
Hma1.2p1_1276F.1_g272150 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.4e-49 199.9 171 59.1
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 1.1e-44 184.9 234 41.9
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 6.3e-43 179.1 299 32.1
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 1.3e-35 154.8 305 28.9
Hma1.2p1_1819F.1_g304100 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 1.8e-34 151.0 129 62.0
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 7.2e-31 139.0 183 44.3
Hma1.2p1_0367F.1_g137160 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.7e-27 126.7 87 67.8
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 3.7e-27 126.7 101 59.4
Hma1.2p1_0422F.1_g150110 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 5.0e-24 116.3 132 49.2
Cre12.g554600 Chlamydomonas reinhardtii HOM05D007297 ORTHO05D009352 3.2e-23 113.6 212 33.5
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 4.2e-23 113.2 106 57.5
MCO13G078 Micromonas commoda HOM05D007297 ORTHO05D009352 3.0e-21 107.1 322 30.1
MCO16G326 Micromonas commoda HOM05D007297 ORTHO05D268116 1.5e-07 61.6 140 30.0
Eucgr.L00579 Eucalyptus grandis HOM05D007297 ORTHO05D009352 2.1e-06 57.8 54 46.3


User provided reference genes

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