Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 5.5e-209 730.7 368 100.0
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 1.2e-190 669.8 376 92.0
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 8.3e-173 610.5 376 83.5
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.7e-170 602.8 375 83.7
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.2e-168 594.3 367 81.7
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.2e-156 555.4 378 75.1
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.1e-156 555.1 378 74.9
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.1e-152 542.7 376 74.5
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 4.0e-151 538.5 376 73.7
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 6.9e-151 537.7 376 73.7
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 8.4e-149 530.8 375 73.1
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.1e-145 520.4 377 71.4
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.1e-132 477.2 371 66.8
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.5e-126 456.8 375 61.9
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 5.8e-126 454.9 379 60.9
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 9.3e-124 447.6 376 62.0
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 2.1e-123 446.4 374 61.0
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 3.0e-122 442.6 377 60.5
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 8.7e-122 441.0 377 60.5
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 5.7e-121 438.3 373 61.1
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 5.7e-121 438.3 378 61.4
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 7.4e-121 438.0 374 60.4
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.7e-120 435.6 374 61.8
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 4.8e-120 435.3 374 59.6
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 4.8e-120 435.3 378 59.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 1.1e-119 434.1 374 59.6
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.8e-119 433.3 374 59.9
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.8e-119 433.3 374 59.6
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 5.3e-119 431.8 383 60.3
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.2e-118 430.6 380 59.7
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.5e-118 430.3 376 59.8
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 2.0e-118 429.9 376 59.0
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 4.5e-118 428.7 382 59.9
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.0e-117 427.6 384 58.9
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.3e-117 427.2 374 59.6
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 2.9e-117 426.0 374 59.4
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.9e-117 426.0 378 61.1
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 5.0e-117 425.2 374 58.6
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 1.1e-116 424.1 374 58.6
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.9e-116 423.3 383 57.4
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 2.5e-116 422.9 373 60.9
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.2e-116 422.5 374 58.3
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 1.6e-115 420.2 374 57.8
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.1e-115 419.9 378 59.8
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 2.7e-115 419.5 374 59.1
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 3.6e-115 419.1 373 59.5
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 1.4e-114 417.2 373 58.2
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 3.0e-114 416.0 374 58.3
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.0e-114 416.0 386 59.3
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 3.9e-114 415.6 381 58.0
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 5.1e-114 415.2 378 58.7
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.1e-113 414.1 373 58.4
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 2.5e-113 412.9 384 57.8
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 4.3e-113 412.1 374 57.2
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 2.8e-112 409.5 375 57.3
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.8e-112 409.5 382 55.8
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.7e-112 409.1 382 56.0
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 4.8e-112 408.7 374 58.6
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.3e-112 408.3 382 55.8
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.4e-111 406.4 376 56.6
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.4e-111 406.4 379 57.0
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 6.9e-111 404.8 376 55.9
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 6.9e-111 404.8 379 57.0
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.2e-110 404.1 375 57.9
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 3.4e-110 402.5 377 56.0
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.7e-110 401.4 380 56.6
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 7.7e-110 401.4 382 55.2
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.0e-109 401.0 363 58.4
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.9e-109 399.4 377 55.7
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 2.9e-109 399.4 375 55.7
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.9e-109 399.4 372 57.5
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 5.0e-109 398.7 375 56.5
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.5e-109 398.3 380 56.1
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.9e-108 396.7 376 54.8
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 2.5e-108 396.4 376 54.8
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 3.2e-108 396.0 375 55.5
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.4e-108 394.4 375 56.5
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 2.7e-107 392.9 375 57.3
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 2.7e-107 392.9 370 56.2
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.6e-107 392.5 375 57.1
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.1e-107 391.7 375 57.1
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 2.3e-106 389.8 374 53.7
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.3e-106 389.8 375 57.1
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.3e-106 389.8 375 57.1
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 3.0e-106 389.4 374 54.0
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 3.0e-106 389.4 374 53.7
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 3.0e-106 389.4 355 57.2
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 3.0e-106 389.4 390 53.3
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 6.7e-106 388.3 374 53.5
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 6.7e-106 388.3 372 56.7
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.0e-105 386.7 370 57.6
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 2.6e-105 386.3 376 53.2
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 3.3e-105 386.0 378 55.3
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 7.4e-105 384.8 370 53.5
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 7.4e-105 384.8 376 56.1
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.3e-104 384.0 375 56.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.7e-104 383.6 373 53.9
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 4.8e-104 382.1 351 56.1
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.5e-102 377.1 336 57.1
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.0e-102 376.7 336 57.1
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 5.9e-102 375.2 359 55.7
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.7e-98 361.7 371 52.0
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.8e-96 356.3 361 52.1
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.1e-91 340.1 366 50.3
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.0e-90 335.9 182 90.7
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.7e-83 313.2 372 47.0
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.8e-82 310.5 288 56.2
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 3.4e-81 306.2 260 58.8
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.1e-79 301.2 452 40.7
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 1.1e-79 301.2 374 46.0
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.0e-77 294.7 370 45.7
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 3.4e-73 279.6 372 44.9
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 5.7e-73 278.9 376 43.6
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 9.2e-71 271.6 347 45.2
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 3.8e-69 266.2 345 42.0
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 1.5e-68 264.2 354 44.1
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 2.6e-65 253.4 368 39.7
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 2.2e-64 250.4 368 40.8
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 8.6e-61 238.4 227 58.6
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 6.4e-56 222.2 193 58.5
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 3.3e-52 209.9 196 49.5
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.5e-44 183.7 180 57.8
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 8.1e-43 178.7 326 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.8e-42 177.6 238 41.2
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 1.7e-40 171.0 157 53.5
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 1.9e-36 157.5 299 30.4
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.3e-36 155.6 131 56.5
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 9.6e-36 155.2 131 57.3
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.4e-34 151.4 138 52.2
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.7e-32 144.4 131 55.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 7.6e-25 119.0 95 55.8
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.7e-24 117.9 95 55.8
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.9e-24 116.3 95 53.7
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.2e-23 113.6 95 53.7
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 1.6e-22 111.3 104 56.7
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.7e-21 105.9 100 50.0
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 2.5e-20 104.0 282 25.5
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 6.2e-19 99.4 110 48.2
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.4e-15 88.2 222 34.2
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.1e-14 84.3 72 52.8
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.5e-12 77.4 65 60.0
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.3e-12 76.6 65 60.0
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.6e-11 74.7 102 44.1
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.6e-11 74.7 102 44.1
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 6.2e-11 72.8 58 58.6
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.2e-11 72.8 59 61.0
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 8.2e-11 72.4 76 47.4
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.1e-10 72.0 45 80.0
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 6.9e-10 69.3 90 54.4
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 7.1e-07 59.3 120 41.7


User provided reference genes

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