Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.9e-191 672.5 802 100.0
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.8e-173 613.2 360 95.6
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 3.7e-173 612.8 360 95.6
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.0e-130 469.5 373 75.9
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 6.5e-130 469.2 377 78.0
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.7e-128 463.0 373 76.4
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 4.9e-109 399.8 395 66.8
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.4e-84 317.8 331 59.5
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.1e-83 314.7 373 59.0
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.9e-81 308.1 379 56.2
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.2e-68 263.8 336 53.9
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 5.1e-66 256.9 341 54.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.4e-61 240.0 303 51.2
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.9e-53 214.5 388 43.0
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.9e-53 213.8 380 44.7
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.8e-50 205.3 407 45.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.3e-50 204.9 380 44.7
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 7.4e-49 199.9 376 44.4
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 6.3e-48 196.8 336 42.9
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 8.2e-48 196.4 363 45.5
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.9e-45 188.0 382 44.5
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.1e-44 186.0 382 45.8
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 3.2e-44 184.5 374 43.9
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 3.2e-44 184.5 365 40.5
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 4.2e-44 184.1 383 43.1
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 7.2e-44 183.3 381 43.6
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 9.3e-44 183.0 320 45.3
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 9.3e-44 183.0 337 41.5
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.7e-43 181.4 361 41.3
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 7.9e-43 179.9 327 42.5
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.0e-42 179.5 388 41.2
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.8e-42 178.7 383 41.5
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 3.9e-42 177.6 387 40.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.9e-42 177.6 368 45.4
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 6.7e-42 176.8 290 46.9
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 5.7e-41 173.7 353 43.1
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.1e-39 169.5 400 38.8
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.1e-39 169.5 329 43.5
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.8e-39 168.7 411 39.9
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 4.1e-39 167.5 429 37.3
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.5e-38 165.6 321 41.7
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 2.6e-38 164.9 434 38.9
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.7e-38 163.3 356 43.0
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.0e-37 162.9 325 42.5
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.0e-37 162.9 364 40.4
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.8e-37 161.0 335 38.8
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 5.0e-37 160.6 328 44.2
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 5.0e-37 160.6 422 39.1
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 6.5e-37 160.2 327 39.1
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 7.2e-36 156.8 446 36.3
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.2e-35 156.0 409 41.6
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 3.6e-35 154.5 420 35.2
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.6e-35 154.1 284 45.1
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.0e-34 152.9 313 38.7
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-34 152.5 440 36.1
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.8e-34 152.1 226 46.0
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 2.3e-34 151.8 388 40.2
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 2.3e-34 151.8 352 38.6
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.9e-34 151.0 367 37.3
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 6.7e-34 150.2 270 46.3
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.1e-33 149.4 279 46.2
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.1e-33 149.4 440 35.9
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-33 149.4 280 41.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.5e-33 149.1 281 46.6
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 3.3e-33 147.9 322 38.2
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 7.4e-33 146.7 262 42.0
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.7e-32 145.6 265 46.4
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 3.7e-32 144.4 369 41.7
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 3.7e-32 144.4 369 41.7
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 6.3e-32 143.7 380 37.6
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.1e-31 142.9 388 38.1
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 2.4e-31 141.7 373 35.9
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 2.4e-31 141.7 373 35.9
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 3.1e-31 141.4 415 38.3
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 3.1e-31 141.4 415 38.3
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.1e-31 141.4 258 45.3
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 6.9e-31 140.2 329 36.8
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 9.1e-31 139.8 390 37.9
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.2e-30 139.4 320 39.7
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.5e-30 139.0 360 34.7
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 2.0e-30 138.7 401 39.9
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 4.5e-30 137.5 320 40.0
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 5.9e-30 137.1 393 36.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.0e-29 136.3 403 34.5
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.3e-29 136.0 421 37.8
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.7e-29 135.6 392 34.7
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 2.9e-29 134.8 230 43.0
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 6.5e-29 133.7 441 32.0
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 6.5e-29 133.7 389 36.8
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.1e-28 132.9 245 40.0
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.1e-28 132.9 202 48.0
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 4.2e-28 131.0 233 42.9
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.2e-27 129.4 230 42.2
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.6e-27 129.0 260 40.0
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.3e-26 125.2 214 45.3
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.3e-26 125.2 367 34.9
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 8.8e-26 123.2 212 49.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.5e-25 122.5 229 41.9
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.0e-25 122.1 201 47.3
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.7e-24 119.0 359 32.3
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 3.7e-24 117.9 412 31.3
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 6.3e-24 117.1 210 44.3
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 6.3e-24 117.1 397 36.3
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 8.2e-24 116.7 217 45.6
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.1e-23 116.3 322 36.3
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.8e-23 115.5 435 34.0
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.1e-23 114.4 222 38.3
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.1e-23 114.4 483 27.7
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 5.3e-23 114.0 205 42.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 7.0e-23 113.6 390 32.8
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-22 112.8 313 33.9
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-22 112.8 333 34.5
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.0e-22 112.1 211 39.3
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.6e-22 111.7 385 31.9
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.5e-22 110.9 373 33.8
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 5.9e-22 110.5 211 42.7
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 7.7e-22 110.2 390 32.1
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.7e-22 110.2 467 31.9
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.2e-21 108.6 289 36.7
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.9e-21 108.2 202 37.1
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.8e-21 107.8 212 42.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 5.0e-21 107.5 209 43.5
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.5e-20 105.9 289 36.0
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.5e-20 105.9 289 36.0
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 2.5e-20 105.1 448 28.3
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 7.2e-20 103.6 225 37.3
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.2e-19 102.8 449 28.1
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.7e-19 101.7 340 34.1
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 4.7e-19 100.9 305 33.1
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.8e-18 99.0 198 46.5
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.7e-18 97.1 333 31.5
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.1e-17 96.3 310 31.9
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.5e-17 95.9 196 38.3
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 3.3e-17 94.7 356 33.1
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.8e-15 89.0 63 68.3
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.4e-15 88.6 172 37.8
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 5.3e-15 87.4 144 41.7
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 9.1e-15 86.7 273 35.2
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 9.1e-15 86.7 353 30.3
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.6e-14 85.9 92 63.0
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.5e-14 84.7 278 35.3
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 8.5e-13 80.1 334 28.7
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 8.5e-13 80.1 175 40.6
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 8.5e-13 80.1 316 30.4
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 5.5e-12 77.4 209 37.3
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 5.5e-12 77.4 191 36.6
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 7.2e-12 77.0 186 37.6
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.1e-11 75.5 55 69.1
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.6e-11 74.7 61 63.9
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 8.0e-11 73.6 235 30.6
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.0e-10 71.6 216 33.3
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 5.2e-10 70.9 222 36.5
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 6.8e-10 70.5 299 30.4
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.4e-09 67.8 94 48.9
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 7.5e-09 67.0 142 39.4
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.2e-08 65.5 227 31.7
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.2e-08 65.5 219 26.9
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.2e-08 65.5 355 27.9
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.8e-08 65.1 153 50.3
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 3.7e-08 64.7 100 43.0
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 6.3e-08 63.9 293 29.0
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.2e-06 59.7 299 30.4


User provided reference genes

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